Non-Coding RNA Search

rpigca0_000385.y1

Sequence:


               
               TCTTTCTCCATGAAATTAGAAAAGATTAAATATATTTTTATCCAAGTGATACTTAAGGAT
CATTCCCTGCTATGGAGTATGGGTTTGGGTTATCCTTTTAAAGGGGCTTAAGCTCTCTTA
ATTACTTAGAAGAAATTAATTTCTATTAATATCCTATGTAGCCAGTCTGGCCAGCCAATG
ATATCATCATTACGGTTAAATAACCTTGGCTTGAAGCAGAGAAACTTGGTCAAGGGCAAT
CTAGACCCCAAAAAAAGAGTTCATTTTTCCTCCTCCTCTTAATAACAGATAAACAAAATA
TTTCTCAACACAATCTGCCATCTCTAGAGAAGCTCTCCCCTAGAGATCTGTCTGTGCTAT
TTTAAAGGGCTAGCTCCTTGGAGTCCCTGAATTACAGAGTCCTTTCAGTATTTTTGGAAA
TCTCAATTTGGTTTCCTCCTGTCCTGTCTGCTTCTGGCTCCGGAGCACTTACGTAATGCA
GCTCAGCTGCACATGTTGTCTAATCCAGAGGGTGAGCTTTAGCTGCTCACACAGGACCGT
GTGCTCTGAATTTTGGCCATGTGAGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTTCTCCATGAAATTAGAAAAGATTAAATATATTTTTATCCAAGTGATACTTAAGGAT
CATTCCCTGCTATGGAGTATGGGTTTGGGTTATCCTTTTAAAGGGGCTTAAGCTCTCTTA
ATTACTTAGAAGAAATTAATTTCTATTAATATCCTATGTAGCCAGTCTGGCCAGCCAATG
ATATCATCATTACGGTTAAATAACCTTGGCTTGAAGCAGAGAAACTTGGTCAAGGGCAAT
CTAGACCCCAAAAAAAGAGTTCATTTTTCCTCCTCCTCTTAATAACAGATAAACAAAATA
TTTCTCAACACAATCTGCCATCTCTAGAGAAGCTCTCCCCTAGAGATCTGTCTGTGCTAT
TTTAAAGGGCTAGCTCCTTGGAGTCCCTGAATTACAGAGTCCTTTCAGTATTTTTGGAAA
TCTCAATTTGGTTTCCTCCTGTCCTGTCTGCTTCTGGCTCCGGAGCACTTACGTAATGCA
GCTCAGCTGCACATGTTGTCTAATCCAGAGGGTGAGCTTTAGCTGCTCACACAGGACCGT
GTGCTCTGAATTTTGGCCATGTGAGCTC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               273-369, - strand, RNAz p=0.514498
               

               
               450-557, + strand, RNAz p=0.857161

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               273-369, - strand, RNAz p=0.514498
               

               
               450-557, + strand, RNAz p=0.857161

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-124, gnl|bosTau2|chr15 (47674080-47674203)
               

               
               1-124, gnl|canFam2|chr18 (46603504-46602943)
               

               
               1-124, gnl|dasNov1|scaffold_5637 (9752-9192)
               

               
               1-124, gnl|echTel1|scaffold_311183 (3419-3907)
               

               
               1-124, gnl|hg17|chr11 (45829319-45829898)
               

               
               1-124, gnl|Hg17|chr11 (45829736-45829897)
               

               
               1-124, gnl|loxAfr1|scaffold_16162 (52814-53355)
               

               
               1-124, gnl|mm7|chr2 (92281634-92281110)
               

               
               1-124, gnl|monDom2|scaffold_33 (11856320-11856875)
               

               
               1-124, gnl|oryCun1|scaffold_186555 (3028-2501)
               

               
               1-124, gnl|panTro1|chr9 (46335756-46336334)
               

               
               1-124, gnl|rheMac2|chr14 (26285312-26284735)
               

               
               1-124, gnl|rn3|chr3 (76724175-76723642)
               


               
               125-568, gnl|bosTau2|chr15 (47675023-47675466)
               

               
               125-568, gnl|Hg17|chr11 (45829898-45830364)
               

               
               125-568, gnl|Mm7|chr2 (92281108-92280646)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-124, gnl|bosTau2|chr15 (47674080-47674203)
               

               
               1-124, gnl|canFam2|chr18 (46603504-46602943)
               

               
               1-124, gnl|dasNov1|scaffold_5637 (9752-9192)
               

               
               1-124, gnl|echTel1|scaffold_311183 (3419-3907)
               

               
               1-124, gnl|hg17|chr11 (45829319-45829898)
               

               
               1-124, gnl|Hg17|chr11 (45829736-45829897)
               

               
               1-124, gnl|loxAfr1|scaffold_16162 (52814-53355)
               

               
               1-124, gnl|mm7|chr2 (92281634-92281110)
               

               
               1-124, gnl|monDom2|scaffold_33 (11856320-11856875)
               

               
               1-124, gnl|oryCun1|scaffold_186555 (3028-2501)
               

               
               1-124, gnl|panTro1|chr9 (46335756-46336334)
               

               
               1-124, gnl|rheMac2|chr14 (26285312-26284735)
               

               
               1-124, gnl|rn3|chr3 (76724175-76723642)
               


               
               125-568, gnl|bosTau2|chr15 (47675023-47675466)
               

               
               125-568, gnl|Hg17|chr11 (45829898-45830364)
               

               
               125-568, gnl|Mm7|chr2 (92281108-92280646)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	273-369, - strand, RNAz p=0.514498
	450-557, + strand, RNAz p=0.857161

	1-124, gnl\|bosTau2\|chr15 (47674080-47674203)
	1-124, gnl\|canFam2\|chr18 (46603504-46602943)
	1-124, gnl\|dasNov1\|scaffold_5637 (9752-9192)
	1-124, gnl\|echTel1\|scaffold_311183 (3419-3907)
	1-124, gnl\|hg17\|chr11 (45829319-45829898)
	1-124, gnl\|Hg17\|chr11 (45829736-45829897)
	1-124, gnl\|loxAfr1\|scaffold_16162 (52814-53355)
	1-124, gnl\|mm7\|chr2 (92281634-92281110)
	1-124, gnl\|monDom2\|scaffold_33 (11856320-11856875)
	1-124, gnl\|oryCun1\|scaffold_186555 (3028-2501)
	1-124, gnl\|panTro1\|chr9 (46335756-46336334)
	1-124, gnl\|rheMac2\|chr14 (26285312-26284735)
	1-124, gnl\|rn3\|chr3 (76724175-76723642)

	125-568, gnl\|bosTau2\|chr15 (47675023-47675466)
	125-568, gnl\|Hg17\|chr11 (45829898-45830364)
	125-568, gnl\|Mm7\|chr2 (92281108-92280646)