Non-Coding RNA Search

rpigca0_001536.y1

Sequence:


               
               AAACAAAAACAAAAAGGTGCTTAAAGCAAATATATAGCTTAATGAATTTTTAAAATGAGT
ACATTAGGGAGTTTTTTTTGTTGTTATTTTTTTGGCTTATGTCATGCCTGTATTTATAAG
AAGGGAAGGAGTTGATAGAGGGCTAGAATTTTTGAAAAGAACAAAGCTTTGAGGAATCCG
AGAACACCAGATCTTTGCCTAGGCTCTGCCTTCACTTTACTATCTCTTTGGGCTAGTCAT
TTAACTTAATTTGGGCCTCAGATTTTTCTATACAGTAGGGATAATAACTTGTGCAAGGTG
ACTGGTGCAATTTAGGTAAACTTAAAGCAGCATAGAATACTACTACTAGATAGGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACAAAAACAAAAAGGTGCTTAAAGCAAATATATAGCTTAATGAATTTTTAAAATGAGT
ACATTAGGGAGTTTTTTTTGTTGTTATTTTTTTGGCTTATGTCATGCCTGTATTTATAAG
AAGGGAAGGAGTTGATAGAGGGCTAGAATTTTTGAAAAGAACAAAGCTTTGAGGAATCCG
AGAACACCAGATCTTTGCCTAGGCTCTGCCTTCACTTTACTATCTCTTTGGGCTAGTCAT
TTAACTTAATTTGGGCCTCAGATTTTTCTATACAGTAGGGATAATAACTTGTGCAAGGTG
ACTGGTGCAATTTAGGTAAACTTAAAGCAGCATAGAATACTACTACTAGATAGGCCT

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

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               81-349, gnl|bosTau2|chr17 (42131466-42131741)
               

               
               81-349, gnl|canFam2|chr26 (26093546-26093732)
               

               
               81-349, gnl|dasNov1|scaffold_48331 (5058-5219)
               

               
               81-349, gnl|hg17|chr22 (28620678-28620868)
               

               
               81-349, gnl|Hg17|chr22 (28620677-28620954)
               

               
               81-349, gnl|panTro1|chr23 (28720016-28720206)
               

               
               81-349, gnl|rheMac2|chr10 (73758577-73758767)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               81-349, gnl|bosTau2|chr17 (42131466-42131741)
               

               
               81-349, gnl|canFam2|chr26 (26093546-26093732)
               

               
               81-349, gnl|dasNov1|scaffold_48331 (5058-5219)
               

               
               81-349, gnl|hg17|chr22 (28620678-28620868)
               

               
               81-349, gnl|Hg17|chr22 (28620677-28620954)
               

               
               81-349, gnl|panTro1|chr23 (28720016-28720206)
               

               
               81-349, gnl|rheMac2|chr10 (73758577-73758767)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	81-349, gnl\|bosTau2\|chr17 (42131466-42131741)
	81-349, gnl\|canFam2\|chr26 (26093546-26093732)
	81-349, gnl\|dasNov1\|scaffold_48331 (5058-5219)
	81-349, gnl\|hg17\|chr22 (28620678-28620868)
	81-349, gnl\|Hg17\|chr22 (28620677-28620954)
	81-349, gnl\|panTro1\|chr23 (28720016-28720206)
	81-349, gnl\|rheMac2\|chr10 (73758577-73758767)