Non-Coding RNA Search

rpigca0_001714.y1

Sequence:


               
               ATGCATTATCTTGATCAATCCTTACAATACGTCTATAATGTCGTTATTACTATTATCCTT
ATTCTATGAAGGAAGAAATTTAGGCTTGGCGAGATGAAGGAACAAAGAGGTGAGGCCAGT
ATTTAAATACTGGCATTTGGCTCCAGATCCCAAGGTTTTCCACCTACGTGCGTGTTCTAT
TAGGCATCTCTGTATGCAGAGGAGAGGGTACCTGGATTTTCTTGCTCTTCCCTAATAAAT
CCAGGTATTTCATTTCAGAATTAACCTAACCTTTTCTCTTGCACACAGCCCTTCAAAGGG
TAGGGAGTTGTTACACATCAGCATTGGCTGGTTTCTCCTACCTGGTGTCTGGACAAGCAG
CTGGAATTGAGAGTGAAATAGGGCGGCATGTTTTTCTCCCCAGGGGCAGAATCTCTAGTA
AGAAGGAAACAAAGACTCATTAAATCTGAGAACTGACCGAAAATCTGGCGCACAGCTAAC
TCAGCTAATTTGGGGATGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGCATTATCTTGATCAATCCTTACAATACGTCTATAATGTCGTTATTACTATTATCCTT
ATTCTATGAAGGAAGAAATTTAGGCTTGGCGAGATGAAGGAACAAAGAGGTGAGGCCAGT
ATTTAAATACTGGCATTTGGCTCCAGATCCCAAGGTTTTCCACCTACGTGCGTGTTCTAT
TAGGCATCTCTGTATGCAGAGGAGAGGGTACCTGGATTTTCTTGCTCTTCCCTAATAAAT
CCAGGTATTTCATTTCAGAATTAACCTAACCTTTTCTCTTGCACACAGCCCTTCAAAGGG
TAGGGAGTTGTTACACATCAGCATTGGCTGGTTTCTCCTACCTGGTGTCTGGACAAGCAG
CTGGAATTGAGAGTGAAATAGGGCGGCATGTTTTTCTCCCCAGGGGCAGAATCTCTAGTA
AGAAGGAAACAAAGACTCATTAAATCTGAGAACTGACCGAAAATCTGGCGCACAGCTAAC
TCAGCTAATTTGGGGATGTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               142-288, - strand, RNAz p=0.999998

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               142-288, - strand, RNAz p=0.999998

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-500, gnl|bosTau2|chr16 (1009025-1009514)
               

               
               1-500, gnl|Hg17|chr1 (141513571-141514737)
               

               
               1-500, gnl|Mm7|chr1 (131312049-131311612)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-500, gnl|bosTau2|chr16 (1009025-1009514)
               

               
               1-500, gnl|Hg17|chr1 (141513571-141514737)
               

               
               1-500, gnl|Mm7|chr1 (131312049-131311612)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	1-500, gnl\|bosTau2\|chr16 (1009025-1009514)
	1-500, gnl\|Hg17\|chr1 (141513571-141514737)
	1-500, gnl\|Mm7\|chr1 (131312049-131311612)