Non-Coding RNA Search

rpigca0_002194.y1

Sequence:


               
               CCAAACAAGCTAAAAATAAACAAGGTGGTCGTTATCCAGTCATTGCACCTAGGTTGGGGA
ACCTCTGCTCCCTAATGCTTTACCAGTTCTGACACCATGTTGCAGAGAGAGCAGAGCCAA
GCACATTTGACTGTCAGAAGGCATTTAATGAGAGCGTTATCTGACTTTATGTTTGGTGAA
CTACTTGGTGATGCAGAAACTGTCTTCACAATTCTTTAAAGCTGACTCATTATGTGTACA
CATAACACCCTGAGCGGGTCCTCTAAGTTTGCATGCTGAGGAGTTAGGCCTCTGGGGGAC
TTATTAAAAGGAATGCAGGTGTATTCTTTCTTCAATGACACTATGAAATTACTCCAATAA
TATAATTCTCCAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAAACAAGCTAAAAATAAACAAGGTGGTCGTTATCCAGTCATTGCACCTAGGTTGGGGA
ACCTCTGCTCCCTAATGCTTTACCAGTTCTGACACCATGTTGCAGAGAGAGCAGAGCCAA
GCACATTTGACTGTCAGAAGGCATTTAATGAGAGCGTTATCTGACTTTATGTTTGGTGAA
CTACTTGGTGATGCAGAAACTGTCTTCACAATTCTTTAAAGCTGACTCATTATGTGTACA
CATAACACCCTGAGCGGGTCCTCTAAGTTTGCATGCTGAGGAGTTAGGCCTCTGGGGGAC
TTATTAAAAGGAATGCAGGTGTATTCTTTCTTCAATGACACTATGAAATTACTCCAATAA
TATAATTCTCCAAGT

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               3-375, gnl|bosTau2|chr22 (27766246-27765882)
               

               
               3-375, gnl|canFam2|chr20 (29816783-29816470)
               

               
               3-375, gnl|dasNov1|scaffold_154 (50888-51193)
               

               
               3-375, gnl|echTel1|scaffold_317999 (288278-287982)
               

               
               3-375, gnl|hg17|chr3 (64392502-64392808)
               

               
               3-375, gnl|Hg17|chr3 (64392879-64392522)
               

               
               3-375, gnl|loxAfr1|scaffold_7431 (31310-31602)
               

               
               3-375, gnl|mm7|chr6 (92782904-92783217)
               

               
               3-375, gnl|Mm7|chr6 (92783289-92782923)
               

               
               3-375, gnl|monDom2|scaffold_5 (10631605-10631903)
               

               
               3-375, gnl|oryCun1|scaffold_176350 (80646-80968)
               

               
               3-375, gnl|panTro1|chrUn_random (23899003-23898697)
               

               
               3-375, gnl|rheMac2|chr2 (71968310-71968005)
               

               
               3-375, gnl|rn3|chr4 (127154281-127154602)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-375, gnl|bosTau2|chr22 (27766246-27765882)
               

               
               3-375, gnl|canFam2|chr20 (29816783-29816470)
               

               
               3-375, gnl|dasNov1|scaffold_154 (50888-51193)
               

               
               3-375, gnl|echTel1|scaffold_317999 (288278-287982)
               

               
               3-375, gnl|hg17|chr3 (64392502-64392808)
               

               
               3-375, gnl|Hg17|chr3 (64392879-64392522)
               

               
               3-375, gnl|loxAfr1|scaffold_7431 (31310-31602)
               

               
               3-375, gnl|mm7|chr6 (92782904-92783217)
               

               
               3-375, gnl|Mm7|chr6 (92783289-92782923)
               

               
               3-375, gnl|monDom2|scaffold_5 (10631605-10631903)
               

               
               3-375, gnl|oryCun1|scaffold_176350 (80646-80968)
               

               
               3-375, gnl|panTro1|chrUn_random (23899003-23898697)
               

               
               3-375, gnl|rheMac2|chr2 (71968310-71968005)
               

               
               3-375, gnl|rn3|chr4 (127154281-127154602)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	3-375, gnl\|bosTau2\|chr22 (27766246-27765882)
	3-375, gnl\|canFam2\|chr20 (29816783-29816470)
	3-375, gnl\|dasNov1\|scaffold_154 (50888-51193)
	3-375, gnl\|echTel1\|scaffold_317999 (288278-287982)
	3-375, gnl\|hg17\|chr3 (64392502-64392808)
	3-375, gnl\|Hg17\|chr3 (64392879-64392522)
	3-375, gnl\|loxAfr1\|scaffold_7431 (31310-31602)
	3-375, gnl\|mm7\|chr6 (92782904-92783217)
	3-375, gnl\|Mm7\|chr6 (92783289-92782923)
	3-375, gnl\|monDom2\|scaffold_5 (10631605-10631903)
	3-375, gnl\|oryCun1\|scaffold_176350 (80646-80968)
	3-375, gnl\|panTro1\|chrUn_random (23899003-23898697)
	3-375, gnl\|rheMac2\|chr2 (71968310-71968005)
	3-375, gnl\|rn3\|chr4 (127154281-127154602)