Non-Coding RNA Search

rpigca0_002377.y1

Sequence:


               
               TATTTTTTAATTTAAAAGATTCAGTAGATTTAGCAATTCCCTATTGCCATATATATTTCG
AACATTGATTTTTGTCACTTTTGAGCAAATAAATCTCAGTCCTTTGATATCTAGCCATTT
TGACAGGATGGTGAAACACATTGTGGAGTAAATTGGAACCATATAGAAATATATTTGGGG
TTTGTATTAATAATGATTGCTGCGGGGATGAGGCCATTATGGCTCCCGTCTGACTTAACA
ACATAATTTCCTTTAGAAGCTACTGAGTTCAGTATTATGCATACATGATTTTCTTAACAA
GAGAGCTGTTCTAAAATTTTGATAGTTCAAAAAGGAGTATGCAAGTGATTCTCTAAAATT
AGAAGGAAAATTAACTCAAGTTGCATTTAATTCAAGATTATCTTCAATTTTTAAAGCTTA
CTTTTTTTTATTAGATAACCCCAACAGTTTTATCCCTGTTATCCAGGCGGGTATGCTCAG
CAAATGCAGTAAGGTATTTTTTGATGTATAGAGGTATAGGTTTACATACTATATCCTCAA
ACTGACTGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTTTTTAATTTAAAAGATTCAGTAGATTTAGCAATTCCCTATTGCCATATATATTTCG
AACATTGATTTTTGTCACTTTTGAGCAAATAAATCTCAGTCCTTTGATATCTAGCCATTT
TGACAGGATGGTGAAACACATTGTGGAGTAAATTGGAACCATATAGAAATATATTTGGGG
TTTGTATTAATAATGATTGCTGCGGGGATGAGGCCATTATGGCTCCCGTCTGACTTAACA
ACATAATTTCCTTTAGAAGCTACTGAGTTCAGTATTATGCATACATGATTTTCTTAACAA
GAGAGCTGTTCTAAAATTTTGATAGTTCAAAAAGGAGTATGCAAGTGATTCTCTAAAATT
AGAAGGAAAATTAACTCAAGTTGCATTTAATTCAAGATTATCTTCAATTTTTAAAGCTTA
CTTTTTTTTATTAGATAACCCCAACAGTTTTATCCCTGTTATCCAGGCGGGTATGCTCAG
CAAATGCAGTAAGGTATTTTTTGATGTATAGAGGTATAGGTTTACATACTATATCCTCAA
ACTGACTGAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               374-488, - strand, RNAz p=0.697241

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               374-488, - strand, RNAz p=0.697241

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-488, gnl|bosTau2|chr2 (15075099-15074622)
               

               
               1-488, gnl|Hg17|chr2 (175769879-175769393)
               

               
               1-488, gnl|Mm7|chr2 (73665947-73665499)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-488, gnl|bosTau2|chr2 (15075099-15074622)
               

               
               1-488, gnl|Hg17|chr2 (175769879-175769393)
               

               
               1-488, gnl|Mm7|chr2 (73665947-73665499)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	1-488, gnl\|bosTau2\|chr2 (15075099-15074622)
	1-488, gnl\|Hg17\|chr2 (175769879-175769393)
	1-488, gnl\|Mm7\|chr2 (73665947-73665499)