Non-Coding RNA Search

rpigca0_002914.y1

Sequence:


               
               CACATTCCCAACCACGGAGACAAAAATGACACTTTGTGTTGCTTGAGTACAAATGATCGC
TCTCCTTTCATATAACGAGACTTACACTTGGGTAAGAGGTCTTCACACTGGTGCATTTTC
ATGCATAATATCTCCCACCCCGCCCTTCCTGTACTTTTATCCCCAACAGTGGATCAGAGG
GGAGAAGGTAGGATGTGACAATCTTCTATATAATGAATGTCCCCTGGCATCTCCCCTTCG
AAACTGTAAGCTCTTTGAGGGCAGAGGTCACCCTTGTTCATCTTTGCATCCTCTGGCCGG
AAACTCACTAGAATGCAAGTTCTAAACTGGGATTCTGATGCTTGACAGGCTAGTGGATTT
ATTTCTCCAGTCTTCTGCAAATTATCCAAGTGTGGCAGTGATGGATACTCACGAGAATTC
CCATCAAATGACACAGCTGGAGTTAAAGAGGAAATATTCTCACCGAGAACAATAACAGTG
CTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACATTCCCAACCACGGAGACAAAAATGACACTTTGTGTTGCTTGAGTACAAATGATCGC
TCTCCTTTCATATAACGAGACTTACACTTGGGTAAGAGGTCTTCACACTGGTGCATTTTC
ATGCATAATATCTCCCACCCCGCCCTTCCTGTACTTTTATCCCCAACAGTGGATCAGAGG
GGAGAAGGTAGGATGTGACAATCTTCTATATAATGAATGTCCCCTGGCATCTCCCCTTCG
AAACTGTAAGCTCTTTGAGGGCAGAGGTCACCCTTGTTCATCTTTGCATCCTCTGGCCGG
AAACTCACTAGAATGCAAGTTCTAAACTGGGATTCTGATGCTTGACAGGCTAGTGGATTT
ATTTCTCCAGTCTTCTGCAAATTATCCAAGTGTGGCAGTGATGGATACTCACGAGAATTC
CCATCAAATGACACAGCTGGAGTTAAAGAGGAAATATTCTCACCGAGAACAATAACAGTG
CTT

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               20-165, gnl|bosTau2|chr28 (1488993-1489134)
               

               
               20-165, gnl|canFam2|chr4 (10882996-10882842)
               

               
               20-165, gnl|dasNov1|scaffold_85305 (6694-6577)
               

               
               20-165, gnl|echTel1|scaffold_185204 (9880-10000)
               

               
               20-165, gnl|hg17|chr1 (228062098-228062210)
               

               
               20-165, gnl|Hg17|chr1 (228062238-228062105)
               

               
               20-165, gnl|loxAfr1|scaffold_35899 (10766-10884)
               

               
               20-165, gnl|mm7|chr8 (123637921-123638015)
               

               
               20-165, gnl|panTro1|chr1_random (49576835-49576947)
               

               
               20-165, gnl|rheMac2|chr1 (225325712-225325600)
               

               
               20-165, gnl|rn3|chr19_random (601012-601095)
               


               
               182-477, gnl|bosTau2|chr28 (1489372-1489666)
               

               
               182-477, gnl|Hg17|chr1 (228062082-228061788)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-165, gnl|bosTau2|chr28 (1488993-1489134)
               

               
               20-165, gnl|canFam2|chr4 (10882996-10882842)
               

               
               20-165, gnl|dasNov1|scaffold_85305 (6694-6577)
               

               
               20-165, gnl|echTel1|scaffold_185204 (9880-10000)
               

               
               20-165, gnl|hg17|chr1 (228062098-228062210)
               

               
               20-165, gnl|Hg17|chr1 (228062238-228062105)
               

               
               20-165, gnl|loxAfr1|scaffold_35899 (10766-10884)
               

               
               20-165, gnl|mm7|chr8 (123637921-123638015)
               

               
               20-165, gnl|panTro1|chr1_random (49576835-49576947)
               

               
               20-165, gnl|rheMac2|chr1 (225325712-225325600)
               

               
               20-165, gnl|rn3|chr19_random (601012-601095)
               


               
               182-477, gnl|bosTau2|chr28 (1489372-1489666)
               

               
               182-477, gnl|Hg17|chr1 (228062082-228061788)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	20-165, gnl\|bosTau2\|chr28 (1488993-1489134)
	20-165, gnl\|canFam2\|chr4 (10882996-10882842)
	20-165, gnl\|dasNov1\|scaffold_85305 (6694-6577)
	20-165, gnl\|echTel1\|scaffold_185204 (9880-10000)
	20-165, gnl\|hg17\|chr1 (228062098-228062210)
	20-165, gnl\|Hg17\|chr1 (228062238-228062105)
	20-165, gnl\|loxAfr1\|scaffold_35899 (10766-10884)
	20-165, gnl\|mm7\|chr8 (123637921-123638015)
	20-165, gnl\|panTro1\|chr1_random (49576835-49576947)
	20-165, gnl\|rheMac2\|chr1 (225325712-225325600)
	20-165, gnl\|rn3\|chr19_random (601012-601095)

	182-477, gnl\|bosTau2\|chr28 (1489372-1489666)
	182-477, gnl\|Hg17\|chr1 (228062082-228061788)