rpigca0_003412.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGATCAGTAACAGATGGTCATGATGACAGTAGGAAGAAGGGATAGAGCATTCTGACTTTC GGAGGGTCAGAAAGAAGGAAGCAATGACCTTTAGCTAAGCTTTGAAGTAGGCGTTTGGGA AGAGGAGAGGCAGCTCTGGGCTGGGACTTCAGCAGGAGTTCTGCTTCAAAAGACAGACCT GTCAGAAGGGGCACCCAGGCTCCAGTCAGTTGGAGCAGAGCCTGTCTTCACTTCAGGGAG CCAGTCACACACGAGCGCGGAGGTAAATAACCCAGCAATCTGGGTGTAAGTTCACAATGG CAGACCCCATGGGCTGAGGAAGGAGAGGGCTCAGGCCCTGGACTGGTTAAGGTGAGGAAC TTGGGTTTAGTCACACCTCTTCTTTCCCAGGATGATCTGAGGGATCAGGCCCAGAAGCTG GGACAACGTCTTACTGAAACAGAGGCCGAGAAGAGCCAGCTCCACACAGAGTTGCAGGCT CTGCAGAGGCAGCTCTCCCAGAACCAGGAAGGTGAGGGGCTCAAGGCAGGTGGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGATCAGTAACAGATGGTCATGATGACAGTAGGAAGAAGGGATAGAGCATTCTGACTTTC GGAGGGTCAGAAAGAAGGAAGCAATGACCTTTAGCTAAGCTTTGAAGTAGGCGTTTGGGA AGAGGAGAGGCAGCTCTGGGCTGGGACTTCAGCAGGAGTTCTGCTTCAAAAGACAGACCT GTCAGAAGGGGCACCCAGGCTCCAGTCAGTTGGAGCAGAGCCTGTCTTCACTTCAGGGAG CCAGTCACACACGAGCGCGGAGGTAAATAACCCAGCAATCTGGGTGTAAGTTCACAATGG CAGACCCCATGGGCTGAGGAAGGAGAGGGCTCAGGCCCTGGACTGGTTAAGGTGAGGAAC TTGGGTTTAGTCACACCTCTTCTTTCCCAGGATGATCTGAGGGATCAGGCCCAGAAGCTG GGACAACGTCTTACTGAAACAGAGGCCGAGAAGAGCCAGCTCCACACAGAGTTGCAGGCT CTGCAGAGGCAGCTCTCCCAGAACCAGGAAGGTGAGGGGCTCAAGGCAGGTGGGG |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 33-223, + strand, RNAz p=0.998484 | |
| 388-507, - strand, RNAz p=0.670073 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 33-223, + strand, RNAz p=0.998484 | |
| 388-507, - strand, RNAz p=0.670073 |
| Aligned organism(s): 5 entry(ies) | More info |
| Aligned organism(s): 5 entry(ies) | Help | Less info |
| 2-346, gnl|bosTau2|chr13 (45718953-45719296) | |
| 2-346, gnl|Hg17|chr20 (33550878-33551241) | |
| 349-535, gnl|bosTau2|chr13 (45719343-45719526) | |
| 349-535, gnl|Hg17|chr20 (33551273-33551438) | |
| 349-535, gnl|Mm7|chr2 (155729151-155729319) |
| Aligned organism(s): 5 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-346, gnl|bosTau2|chr13 (45718953-45719296) | |
| 2-346, gnl|Hg17|chr20 (33550878-33551241) | |
| 349-535, gnl|bosTau2|chr13 (45719343-45719526) | |
| 349-535, gnl|Hg17|chr20 (33551273-33551438) | |
| 349-535, gnl|Mm7|chr2 (155729151-155729319) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.119646) |