Non-Coding RNA Search

rpigca0_003466.y1

Sequence:


               
               AGAAAACTAGCCTGAGCCACTCCTGTGAAAAGACTAAACTGGAGTTTAATCTCACAGTGG
CAAGAATGTAAAAAAATTTGCAACAACAAAGCACAGTTTAGCTTTTCAAACTGCTTCCAT
TGAGAGTCTTTGCTTTACATTTGCATAACTTAATGACACATTCTGGCGGTCTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAAACTAGCCTGAGCCACTCCTGTGAAAAGACTAAACTGGAGTTTAATCTCACAGTGG
CAAGAATGTAAAAAAATTTGCAACAACAAAGCACAGTTTAGCTTTTCAAACTGCTTCCAT
TGAGAGTCTTTGCTTTACATTTGCATAACTTAATGACACATTCTGGCGGTCTTCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, + strand, RNAz p=0.786243

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, + strand, RNAz p=0.786243

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-175, gnl|bosTau2|chr27 (23431462-23431636)
               

               
               1-175, gnl|canFam2|chr16 (26556684-26556419)
               

               
               1-175, gnl|dasNov1|scaffold_57323 (3922-3655)
               

               
               1-175, gnl|hg17|chr8 (42030963-42031232)
               

               
               1-175, gnl|Hg17|chr8 (42031123-42031292)
               

               
               1-175, gnl|loxAfr1|scaffold_167724 (721-987)
               

               
               1-175, gnl|oryCun1|scaffold_184425 (4239-4504)
               

               
               1-175, gnl|panTro1|chr7 (43448934-43449203)
               

               
               1-175, gnl|rheMac2|chr8 (42627273-42627543)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-175, gnl|bosTau2|chr27 (23431462-23431636)
               

               
               1-175, gnl|canFam2|chr16 (26556684-26556419)
               

               
               1-175, gnl|dasNov1|scaffold_57323 (3922-3655)
               

               
               1-175, gnl|hg17|chr8 (42030963-42031232)
               

               
               1-175, gnl|Hg17|chr8 (42031123-42031292)
               

               
               1-175, gnl|loxAfr1|scaffold_167724 (721-987)
               

               
               1-175, gnl|oryCun1|scaffold_184425 (4239-4504)
               

               
               1-175, gnl|panTro1|chr7 (43448934-43449203)
               

               
               1-175, gnl|rheMac2|chr8 (42627273-42627543)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	1-175, gnl\|bosTau2\|chr27 (23431462-23431636)
	1-175, gnl\|canFam2\|chr16 (26556684-26556419)
	1-175, gnl\|dasNov1\|scaffold_57323 (3922-3655)
	1-175, gnl\|hg17\|chr8 (42030963-42031232)
	1-175, gnl\|Hg17\|chr8 (42031123-42031292)
	1-175, gnl\|loxAfr1\|scaffold_167724 (721-987)
	1-175, gnl\|oryCun1\|scaffold_184425 (4239-4504)
	1-175, gnl\|panTro1\|chr7 (43448934-43449203)
	1-175, gnl\|rheMac2\|chr8 (42627273-42627543)