rpigca0_003636.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGCGCAGACCAACAACCCGCTGTCGCGGAAGCTGCGTAAGATACTGGACACGCGGCTGG ACAACGACAAGGAGATGTTGGAAGCTCTCAAGGCACTCTCAACCTTTTTTGTTGAAAATA GTTTGCGGACTCGAAGAAATTTACGTGGAGATATTGAACGCAGAAGCTTAGCCATCAATG AAGAGTTTGTAAGCATTTTCAAGGATGTGAAGGAAGAACTTGAAAGCATACATGAAGATG TTCAGGCGATGAGCACCTGTTGTCAAGACATGACAAGTCGCCTGCAGGCAGCCAAGGAAC AAACTCAAGATTTAATAGTGAAAACCACTAAGCTTCAAGCTGAAAGTCAGAGATTAGAAA TCCGAGCCCAAGTTGCAGATGCCTTCTTATCCAAGTTCCAGCTGACATCCGATGAGATGA GTCTTCTCCGAGGGACAAGAGAAGGACCTATCACTGAGGATTTTTTCAAGGCCTTGGGAA GAGTAAAACAGATTCATAACGATGTAAAAGTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGCGCAGACCAACAACCCGCTGTCGCGGAAGCTGCGTAAGATACTGGACACGCGGCTGG ACAACGACAAGGAGATGTTGGAAGCTCTCAAGGCACTCTCAACCTTTTTTGTTGAAAATA GTTTGCGGACTCGAAGAAATTTACGTGGAGATATTGAACGCAGAAGCTTAGCCATCAATG AAGAGTTTGTAAGCATTTTCAAGGATGTGAAGGAAGAACTTGAAAGCATACATGAAGATG TTCAGGCGATGAGCACCTGTTGTCAAGACATGACAAGTCGCCTGCAGGCAGCCAAGGAAC AAACTCAAGATTTAATAGTGAAAACCACTAAGCTTCAAGCTGAAAGTCAGAGATTAGAAA TCCGAGCCCAAGTTGCAGATGCCTTCTTATCCAAGTTCCAGCTGACATCCGATGAGATGA GTCTTCTCCGAGGGACAAGAGAAGGACCTATCACTGAGGATTTTTTCAAGGCCTTGGGAA GAGTAAAACAGATTCATAACGATGTAAAAGTTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 99-216, - strand, RNAz p=0.893182 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 99-216, - strand, RNAz p=0.893182 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 70-216, gnl|bosTau2|chr12 (12185284-12185430) | |
| 70-216, gnl|canFam2|chr25 (4505758-4505599) | |
| 70-216, gnl|danRer3|chrNA (183268251-183268104) | |
| 70-216, gnl|dasNov1|scaffold_18592 (42061-42217) | |
| 70-216, gnl|echTel1|scaffold_217500 (372-217) | |
| 70-216, gnl|fr1|chrUn (54647493-54647333) | |
| 70-216, gnl|galGal2|chr1 (163051160-163051012) | |
| 70-216, gnl|hg17|chr13 (39131500-39131660) | |
| 70-216, gnl|Hg17|chr13 (39131499-39131645) | |
| 70-216, gnl|loxAfr1|scaffold_61329 (8417-8577) | |
| 70-216, gnl|mm7|chr3 (53142204-53142044) | |
| 70-216, gnl|Mm7|chr3 (53142203-53142057) | |
| 70-216, gnl|monDom2|scaffold_15 (52149849-52149999) | |
| 70-216, gnl|oryCun1|scaffold_207177 (4276-4436) | |
| 70-216, gnl|panTro1|chr14 (38505449-38505609) | |
| 70-216, gnl|rheMac2|chr17 (18729847-18730007) | |
| 70-216, gnl|rn3|chr2 (142753071-142752911) | |
| 70-216, gnl|tetNig1|chr16 (5915735-5915883) | |
| 70-216, gnl|xenTro1|scaffold_223 (609078-609242) | |
| 345-465, gnl|bosTau2|chr12 (12192598-12192719) | |
| 345-465, gnl|canFam2|chr25 (4493131-4493014) | |
| 345-465, gnl|danRer3|chrNA (183232653-183232536) | |
| 345-465, gnl|dasNov1|scaffold_63545 (6222-6339) | |
| 345-465, gnl|echTel1|scaffold_200772 (13025-12908) | |
| 345-465, gnl|fr1|chrUn (54642220-54642103) | |
| 345-465, gnl|galGal2|chr1 (163037051-163036934) | |
| 345-465, gnl|hg17|chr13 (39149603-39149720) | |
| 345-465, gnl|Hg17|chr13 (39149603-39149724) | |
| 345-465, gnl|loxAfr1|scaffold_32876 (6858-6976) | |
| 345-465, gnl|mm7|chr3 (53137280-53137163) | |
| 345-465, gnl|Mm7|chr3 (53137278-53137157) | |
| 345-465, gnl|monDom2|scaffold_15 (52178891-52179008) | |
| 345-465, gnl|oryCun1|scaffold_200636 (51972-51855) | |
| 345-465, gnl|panTro1|chr14 (38523565-38523682) | |
| 345-465, gnl|rheMac2|chr17 (18749401-18749518) | |
| 345-465, gnl|rn3|chr2 (142748545-142748428) | |
| 345-465, gnl|tetNig1|chr16 (5919675-5919792) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 70-216, gnl|bosTau2|chr12 (12185284-12185430) | |
| 70-216, gnl|canFam2|chr25 (4505758-4505599) | |
| 70-216, gnl|danRer3|chrNA (183268251-183268104) | |
| 70-216, gnl|dasNov1|scaffold_18592 (42061-42217) | |
| 70-216, gnl|echTel1|scaffold_217500 (372-217) | |
| 70-216, gnl|fr1|chrUn (54647493-54647333) | |
| 70-216, gnl|galGal2|chr1 (163051160-163051012) | |
| 70-216, gnl|hg17|chr13 (39131500-39131660) | |
| 70-216, gnl|Hg17|chr13 (39131499-39131645) | |
| 70-216, gnl|loxAfr1|scaffold_61329 (8417-8577) | |
| 70-216, gnl|mm7|chr3 (53142204-53142044) | |
| 70-216, gnl|Mm7|chr3 (53142203-53142057) | |
| 70-216, gnl|monDom2|scaffold_15 (52149849-52149999) | |
| 70-216, gnl|oryCun1|scaffold_207177 (4276-4436) | |
| 70-216, gnl|panTro1|chr14 (38505449-38505609) | |
| 70-216, gnl|rheMac2|chr17 (18729847-18730007) | |
| 70-216, gnl|rn3|chr2 (142753071-142752911) | |
| 70-216, gnl|tetNig1|chr16 (5915735-5915883) | |
| 70-216, gnl|xenTro1|scaffold_223 (609078-609242) | |
| 345-465, gnl|bosTau2|chr12 (12192598-12192719) | |
| 345-465, gnl|canFam2|chr25 (4493131-4493014) | |
| 345-465, gnl|danRer3|chrNA (183232653-183232536) | |
| 345-465, gnl|dasNov1|scaffold_63545 (6222-6339) | |
| 345-465, gnl|echTel1|scaffold_200772 (13025-12908) | |
| 345-465, gnl|fr1|chrUn (54642220-54642103) | |
| 345-465, gnl|galGal2|chr1 (163037051-163036934) | |
| 345-465, gnl|hg17|chr13 (39149603-39149720) | |
| 345-465, gnl|Hg17|chr13 (39149603-39149724) | |
| 345-465, gnl|loxAfr1|scaffold_32876 (6858-6976) | |
| 345-465, gnl|mm7|chr3 (53137280-53137163) | |
| 345-465, gnl|Mm7|chr3 (53137278-53137157) | |
| 345-465, gnl|monDom2|scaffold_15 (52178891-52179008) | |
| 345-465, gnl|oryCun1|scaffold_200636 (51972-51855) | |
| 345-465, gnl|panTro1|chr14 (38523565-38523682) | |
| 345-465, gnl|rheMac2|chr17 (18749401-18749518) | |
| 345-465, gnl|rn3|chr2 (142748545-142748428) | |
| 345-465, gnl|tetNig1|chr16 (5919675-5919792) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.119646) |