Non-Coding RNA Search

rpigca0_004079.y1

Sequence:


               
               GTTATAATCCAGCAGGGGAGACAGGCAGAGGGTAACATCAAAGCCATGTCAAAGCCAGTG
ATTAGAGGAGGGCTTATGCCCGGAGGCAGGGGAGGCCGACCCAGGCAGGAAGGCTGAGCA
AGCCATGATGGGGCTGCGAGTGGACAGGCCAAGGTCAGGGCTGAGGTCGTAGCGGAGTTC
CCAGGCCATGCCCGTGTGGGTTCAGGAGGATTCTTCTCCTCATTGAGAGGACATGGCTGC
AGGGCTGAGCACCTGTCCCAGAGCAGAGGGGACAAGCCAGACGATGTGACCCACAGCTGG
CCCTGCTCCTGGCCCTGCCTTCAAGCTGGGCGAGAGGCTGCCTGGCCCTGCCTCCCCTCG
CCCCAGTCCTGAGGAATGACTGGCTCCTTACGCTCACAGGCCCGTGGACCCTGTGCTAAA
GGCCATCAAGGAAGGCGACGAAGAGGCTTTGAAGGCCATGATCAAGGCGGGGAAGAACCT
CGCAGAGCCCAACAAAGACGGCTGGCTGCCGCTGCACGAGGCAGCCTACTACGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTATAATCCAGCAGGGGAGACAGGCAGAGGGTAACATCAAAGCCATGTCAAAGCCAGTG
ATTAGAGGAGGGCTTATGCCCGGAGGCAGGGGAGGCCGACCCAGGCAGGAAGGCTGAGCA
AGCCATGATGGGGCTGCGAGTGGACAGGCCAAGGTCAGGGCTGAGGTCGTAGCGGAGTTC
CCAGGCCATGCCCGTGTGGGTTCAGGAGGATTCTTCTCCTCATTGAGAGGACATGGCTGC
AGGGCTGAGCACCTGTCCCAGAGCAGAGGGGACAAGCCAGACGATGTGACCCACAGCTGG
CCCTGCTCCTGGCCCTGCCTTCAAGCTGGGCGAGAGGCTGCCTGGCCCTGCCTCCCCTCG
CCCCAGTCCTGAGGAATGACTGGCTCCTTACGCTCACAGGCCCGTGGACCCTGTGCTAAA
GGCCATCAAGGAAGGCGACGAAGAGGCTTTGAAGGCCATGATCAAGGCGGGGAAGAACCT
CGCAGAGCCCAACAAAGACGGCTGGCTGCCGCTGCACGAGGCAGCCTACTACGGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               417-535, + strand, RNAz p=0.575741

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               417-535, + strand, RNAz p=0.575741

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               19-249, gnl|bosTau2|chr21 (37553271-37553506)
               


               
               341-535, gnl|bosTau2|chr21 (37553536-37553730)
               

               
               341-535, gnl|Hg17|chr14 (93490636-93490447)
               

               
               341-535, gnl|Mm7|chr12 (100831692-100831504)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-249, gnl|bosTau2|chr21 (37553271-37553506)
               


               
               341-535, gnl|bosTau2|chr21 (37553536-37553730)
               

               
               341-535, gnl|Hg17|chr14 (93490636-93490447)
               

               
               341-535, gnl|Mm7|chr12 (100831692-100831504)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	19-249, gnl\|bosTau2\|chr21 (37553271-37553506)

	341-535, gnl\|bosTau2\|chr21 (37553536-37553730)
	341-535, gnl\|Hg17\|chr14 (93490636-93490447)
	341-535, gnl\|Mm7\|chr12 (100831692-100831504)