Non-Coding RNA Search

rpigca0_008376.y1

Sequence:


               
               GCCAACAGTCCTTATGCCCTCTCCTTTCTCACTTGGAGCTGGAGTAGCAGGTTTCTGAGG
TGCAAGGACTGTTGGCAGCAGAAGCCTCAGGAGTGGTGGGGGAGGTCTTGGTAGGAGAGG
AGGCTCTGGAGGAGCGCTTGGAGTCAGCGCTGGGGTCAGGCATCAGCTCCGGCATAGACC
AGCGCCCGTTGATGTGCTCAAACTCCTGAACCTTCTTCTTGACGAGTGACATGACTCCAA
TGCGGGTCAACACTTGCTGGCGACTCAGTCCCTCCCGAGGGACCCCGTCCGCAAAGGTTT
CAGAGCCGTCTGCCCCGGGCTCACAGAGATGGCGCATGAACAAAGACACATAGGCCTTGA
ACTCCTTCTCCGTCTTGCCCCTCAGGTCGCGCACCAGCCACTGGGTGGTGAAGGCGTCCT
GCGGCGGCATGCCCCAGCGCATCACGGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCAACAGTCCTTATGCCCTCTCCTTTCTCACTTGGAGCTGGAGTAGCAGGTTTCTGAGG
TGCAAGGACTGTTGGCAGCAGAAGCCTCAGGAGTGGTGGGGGAGGTCTTGGTAGGAGAGG
AGGCTCTGGAGGAGCGCTTGGAGTCAGCGCTGGGGTCAGGCATCAGCTCCGGCATAGACC
AGCGCCCGTTGATGTGCTCAAACTCCTGAACCTTCTTCTTGACGAGTGACATGACTCCAA
TGCGGGTCAACACTTGCTGGCGACTCAGTCCCTCCCGAGGGACCCCGTCCGCAAAGGTTT
CAGAGCCGTCTGCCCCGGGCTCACAGAGATGGCGCATGAACAAAGACACATAGGCCTTGA
ACTCCTTCTCCGTCTTGCCCCTCAGGTCGCGCACCAGCCACTGGGTGGTGAAGGCGTCCT
GCGGCGGCATGCCCCAGCGCATCACGGCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8BL30_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8BL30_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               20-171, + strand, RNAz p=0.982605

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               20-171, + strand, RNAz p=0.982605

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               20-171, DA436107 CTONG2 Homo sapiens cDNA clone CTONG2002997 5', mRNA 
(dbj|DA436107.1|), blast E-value=0, identity=92.76% 
               

               
               20-171, DB042684 TESTI2 Homo sapiens cDNA clone TESTI2030096 5', mRNA 
(dbj|DB042684.1|), blast E-value=0, identity=92.76% 
               

               
               20-171, DKFZp469K0563_r1 469 (synonym (emb|CR786935.1|), blast E-value=0, 
identity=94.08% 
               

               
               20-171, LB01726.CR_F18 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|DV818543.1|), 
blast E-value=0, identity=92.76% 
               

               
               20-171, LB02828.CR_N10 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV913923.1|), 
blast E-value=0, identity=92.76% 
               

               
               20-171, LB01732.CR_C09 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|EE333441.1|), 
blast E-value=0, identity=92.76%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               20-171, DA436107 CTONG2 Homo sapiens cDNA clone CTONG2002997 5', mRNA 
(dbj|DA436107.1|), blast E-value=0, identity=92.76% 
               

               
               20-171, DB042684 TESTI2 Homo sapiens cDNA clone TESTI2030096 5', mRNA 
(dbj|DB042684.1|), blast E-value=0, identity=92.76% 
               

               
               20-171, DKFZp469K0563_r1 469 (synonym (emb|CR786935.1|), blast E-value=0, 
identity=94.08% 
               

               
               20-171, LB01726.CR_F18 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|DV818543.1|), 
blast E-value=0, identity=92.76% 
               

               
               20-171, LB02828.CR_N10 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV913923.1|), 
blast E-value=0, identity=92.76% 
               

               
               20-171, LB01732.CR_C09 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|EE333441.1|), 
blast E-value=0, identity=92.76%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               20-213, gnl|bosTau2|chr19 (15302782-15302973)
               

               
               20-213, gnl|Hg17|chr17 (7751103-7750910)
               

               
               20-213, gnl|Mm7|chr11 (69431329-69431528)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-213, gnl|bosTau2|chr19 (15302782-15302973)
               

               
               20-213, gnl|Hg17|chr17 (7751103-7750910)
               

               
               20-213, gnl|Mm7|chr11 (69431329-69431528)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	20-171, DA436107 CTONG2 Homo sapiens cDNA clone CTONG2002997 5', mRNA (dbj\|DA436107.1\|), blast E-value=0, identity=92.76%
	20-171, DB042684 TESTI2 Homo sapiens cDNA clone TESTI2030096 5', mRNA (dbj\|DB042684.1\|), blast E-value=0, identity=92.76%
	20-171, DKFZp469K0563_r1 469 (synonym (emb\|CR786935.1\|), blast E-value=0, identity=94.08%
	20-171, LB01726.CR_F18 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb\|DV818543.1\|), blast E-value=0, identity=92.76%
	20-171, LB02828.CR_N10 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb\|DV913923.1\|), blast E-value=0, identity=92.76%
	20-171, LB01732.CR_C09 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb\|EE333441.1\|), blast E-value=0, identity=92.76%

	20-213, gnl\|bosTau2\|chr19 (15302782-15302973)
	20-213, gnl\|Hg17\|chr17 (7751103-7750910)
	20-213, gnl\|Mm7\|chr11 (69431329-69431528)