Non-Coding RNA Search

rpigca0_014193.y1

Sequence:


               
               GGGGGGGCTGAGCACTGCGTGGCGGGGACCACGTCCTCGTCCTCACTCTCAGAGGAGCTC
CCAGCCGTGCTCTCTGAGGCCTGGACCTTCCTTCCGGCGCTTGTAGCCTGGGCTTGGGCG
AGGGTAGCAGCTGGGCCAGCTGGACTACGGTTAGGGTCGACAAAAATCAGAGGGGTTTTA
ATCACCTGGCTGGCCGGCAGCTCGTCGTCGCTGCTGGCGGAGGGCCCCTCGGCCTTCTCC
TCCTTGGCCTTCTTCTGCTCGGCCTTCCCTGCTGAGGCCGTGGCGGCCGGTGGCCTGCCG
CTGGCGGGGCTGCAGCCTCCTCCCTGGGCTGGGGGCGCCTCCCCGTCGCTGCCTGACGAC
TCCTCGCTGCTGCTCTCCGAGTCCTCCGTCGGCTTCCCCGCCTGGGTGGCTGGTGGGCCT
GTCTTCCCAGCGGGAGCCGGGGCTGCCCCCTTCCTGGGGGAGGCCTTGCTGGGGGCTGAG
GCAGCTCTGACCTGGGGCGTCTTCCTGGTGGGCTTCGCCTGTGCGGGCGCCGCCTCCTCA
CTGTCCGAGTCCCCGTCACTGCTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGGGGCTGAGCACTGCGTGGCGGGGACCACGTCCTCGTCCTCACTCTCAGAGGAGCTC
CCAGCCGTGCTCTCTGAGGCCTGGACCTTCCTTCCGGCGCTTGTAGCCTGGGCTTGGGCG
AGGGTAGCAGCTGGGCCAGCTGGACTACGGTTAGGGTCGACAAAAATCAGAGGGGTTTTA
ATCACCTGGCTGGCCGGCAGCTCGTCGTCGCTGCTGGCGGAGGGCCCCTCGGCCTTCTCC
TCCTTGGCCTTCTTCTGCTCGGCCTTCCCTGCTGAGGCCGTGGCGGCCGGTGGCCTGCCG
CTGGCGGGGCTGCAGCCTCCTCCCTGGGCTGGGGGCGCCTCCCCGTCGCTGCCTGACGAC
TCCTCGCTGCTGCTCTCCGAGTCCTCCGTCGGCTTCCCCGCCTGGGTGGCTGGTGGGCCT
GTCTTCCCAGCGGGAGCCGGGGCTGCCCCCTTCCTGGGGGAGGCCTTGCTGGGGGCTGAG
GCAGCTCTGACCTGGGGCGTCTTCCTGGTGGGCTTCGCCTGTGCGGGCGCCGCCTCCTCA
CTGTCCGAGTCCCCGTCACTGCTCTC

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

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               12-187, gnl|bosTau2|chr7 (38973029-38972854)
               

               
               12-187, gnl|canFam2|chr4 (61912650-61912302)
               

               
               12-187, gnl|dasNov1|scaffold_27342 (9896-9539)
               

               
               12-187, gnl|echTel1|scaffold_296504 (7026-7329)
               

               
               12-187, gnl|hg17|chr5 (149747564-149747882)
               

               
               12-187, gnl|Hg17|chr5 (149747834-149747656)
               

               
               12-187, gnl|mm7|chr18 (61212528-61212201)
               

               
               12-187, gnl|Mm7|chr18 (61212253-61212431)
               

               
               12-187, gnl|monDom2|scaffold_6 (56727244-56726938)
               

               
               12-187, gnl|oryCun1|scaffold_198701 (42253-42591)
               

               
               12-187, gnl|panTro1|chr4 (156671269-156671587)
               

               
               12-187, gnl|rheMac2|chr6 (146863549-146863867)
               

               
               12-187, gnl|rn3|chr18 (56848769-56848448)
               


               
               334-521, gnl|bosTau2|chr7 (38965661-38965474)
               

               
               334-521, gnl|Hg17|chr5 (149739466-149739285)
               

               
               334-521, gnl|Mm7|chr18 (61217814-61218001)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-187, gnl|bosTau2|chr7 (38973029-38972854)
               

               
               12-187, gnl|canFam2|chr4 (61912650-61912302)
               

               
               12-187, gnl|dasNov1|scaffold_27342 (9896-9539)
               

               
               12-187, gnl|echTel1|scaffold_296504 (7026-7329)
               

               
               12-187, gnl|hg17|chr5 (149747564-149747882)
               

               
               12-187, gnl|Hg17|chr5 (149747834-149747656)
               

               
               12-187, gnl|mm7|chr18 (61212528-61212201)
               

               
               12-187, gnl|Mm7|chr18 (61212253-61212431)
               

               
               12-187, gnl|monDom2|scaffold_6 (56727244-56726938)
               

               
               12-187, gnl|oryCun1|scaffold_198701 (42253-42591)
               

               
               12-187, gnl|panTro1|chr4 (156671269-156671587)
               

               
               12-187, gnl|rheMac2|chr6 (146863549-146863867)
               

               
               12-187, gnl|rn3|chr18 (56848769-56848448)
               


               
               334-521, gnl|bosTau2|chr7 (38965661-38965474)
               

               
               334-521, gnl|Hg17|chr5 (149739466-149739285)
               

               
               334-521, gnl|Mm7|chr18 (61217814-61218001)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               clu (0.119646)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	12-187, gnl\|bosTau2\|chr7 (38973029-38972854)
	12-187, gnl\|canFam2\|chr4 (61912650-61912302)
	12-187, gnl\|dasNov1\|scaffold_27342 (9896-9539)
	12-187, gnl\|echTel1\|scaffold_296504 (7026-7329)
	12-187, gnl\|hg17\|chr5 (149747564-149747882)
	12-187, gnl\|Hg17\|chr5 (149747834-149747656)
	12-187, gnl\|mm7\|chr18 (61212528-61212201)
	12-187, gnl\|Mm7\|chr18 (61212253-61212431)
	12-187, gnl\|monDom2\|scaffold_6 (56727244-56726938)
	12-187, gnl\|oryCun1\|scaffold_198701 (42253-42591)
	12-187, gnl\|panTro1\|chr4 (156671269-156671587)
	12-187, gnl\|rheMac2\|chr6 (146863549-146863867)
	12-187, gnl\|rn3\|chr18 (56848769-56848448)

	334-521, gnl\|bosTau2\|chr7 (38965661-38965474)
	334-521, gnl\|Hg17\|chr5 (149739466-149739285)
	334-521, gnl\|Mm7\|chr18 (61217814-61218001)