Non-Coding RNA Search

rpigca0_014404.y1

Sequence:


               
               TCCTTCTTTGTGCACAGTGTGGCGGCCGAACAACTGCATCTGAAGGTGCTCGATGATGAC
CAGGAGTGTGCCCTAGGAGTGCTGGAGTTCCCCCTGTGTCAGCTTCTTCCCTACGCAGAC
CTTACCCTCGAGCAGCGTTAATCAGCTGGACCACTCAGGCCTAGACAGCCTCATCTCCAT
GAGGCTGGATGCTTCGGTTTCTGCGCATGGAAGAGCGAGAGCTGAGAAGCCCATATACAG
GACCTGAAGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCTTCTTTGTGCACAGTGTGGCGGCCGAACAACTGCATCTGAAGGTGCTCGATGATGAC
CAGGAGTGTGCCCTAGGAGTGCTGGAGTTCCCCCTGTGTCAGCTTCTTCCCTACGCAGAC
CTTACCCTCGAGCAGCGTTAATCAGCTGGACCACTCAGGCCTAGACAGCCTCATCTCCAT
GAGGCTGGATGCTTCGGTTTCTGCGCATGGAAGAGCGAGAGCTGAGAAGCCCATATACAG
GACCTGAAGCCC

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

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               44-197, gnl|bosTau2|chr1 (81932754-81932603)
               

               
               44-197, gnl|canFam2|chr23 (37735208-37735324)
               

               
               44-197, gnl|danRer3|chr16 (20419680-20419788)
               

               
               44-197, gnl|dasNov1|scaffold_57458 (10573-10457)
               

               
               44-197, gnl|echTel1|scaffold_307290 (3809-3693)
               

               
               44-197, gnl|fr1|chrUn (134942185-134942073)
               

               
               44-197, gnl|galGal2|chr7 (28980727-28980620)
               

               
               44-197, gnl|hg17|chr3 (139672405-139672521)
               

               
               44-197, gnl|Hg17|chr3 (139672415-139672566)
               

               
               44-197, gnl|loxAfr1|scaffold_20448 (18662-18547)
               

               
               44-197, gnl|mm7|chr9 (98961252-98961137)
               

               
               44-197, gnl|Mm7|chr9 (98961241-98961090)
               

               
               44-197, gnl|monDom2|scaffold_24 (33756510-33756631)
               

               
               44-197, gnl|oryCun1|scaffold_195295 (7395-7509)
               

               
               44-197, gnl|panTro1|chr2 (141937527-141937643)
               

               
               44-197, gnl|rheMac2|chr2 (149346993-149346877)
               

               
               44-197, gnl|rn3|chr8 (104197091-104196976)
               

               
               44-197, gnl|tetNig1|chr6 (4226371-4226262)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               44-197, gnl|bosTau2|chr1 (81932754-81932603)
               

               
               44-197, gnl|canFam2|chr23 (37735208-37735324)
               

               
               44-197, gnl|danRer3|chr16 (20419680-20419788)
               

               
               44-197, gnl|dasNov1|scaffold_57458 (10573-10457)
               

               
               44-197, gnl|echTel1|scaffold_307290 (3809-3693)
               

               
               44-197, gnl|fr1|chrUn (134942185-134942073)
               

               
               44-197, gnl|galGal2|chr7 (28980727-28980620)
               

               
               44-197, gnl|hg17|chr3 (139672405-139672521)
               

               
               44-197, gnl|Hg17|chr3 (139672415-139672566)
               

               
               44-197, gnl|loxAfr1|scaffold_20448 (18662-18547)
               

               
               44-197, gnl|mm7|chr9 (98961252-98961137)
               

               
               44-197, gnl|Mm7|chr9 (98961241-98961090)
               

               
               44-197, gnl|monDom2|scaffold_24 (33756510-33756631)
               

               
               44-197, gnl|oryCun1|scaffold_195295 (7395-7509)
               

               
               44-197, gnl|panTro1|chr2 (141937527-141937643)
               

               
               44-197, gnl|rheMac2|chr2 (149346993-149346877)
               

               
               44-197, gnl|rn3|chr8 (104197091-104196976)
               

               
               44-197, gnl|tetNig1|chr6 (4226371-4226262)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	44-197, gnl\|bosTau2\|chr1 (81932754-81932603)
	44-197, gnl\|canFam2\|chr23 (37735208-37735324)
	44-197, gnl\|danRer3\|chr16 (20419680-20419788)
	44-197, gnl\|dasNov1\|scaffold_57458 (10573-10457)
	44-197, gnl\|echTel1\|scaffold_307290 (3809-3693)
	44-197, gnl\|fr1\|chrUn (134942185-134942073)
	44-197, gnl\|galGal2\|chr7 (28980727-28980620)
	44-197, gnl\|hg17\|chr3 (139672405-139672521)
	44-197, gnl\|Hg17\|chr3 (139672415-139672566)
	44-197, gnl\|loxAfr1\|scaffold_20448 (18662-18547)
	44-197, gnl\|mm7\|chr9 (98961252-98961137)
	44-197, gnl\|Mm7\|chr9 (98961241-98961090)
	44-197, gnl\|monDom2\|scaffold_24 (33756510-33756631)
	44-197, gnl\|oryCun1\|scaffold_195295 (7395-7509)
	44-197, gnl\|panTro1\|chr2 (141937527-141937643)
	44-197, gnl\|rheMac2\|chr2 (149346993-149346877)
	44-197, gnl\|rn3\|chr8 (104197091-104196976)
	44-197, gnl\|tetNig1\|chr6 (4226371-4226262)