Non-Coding RNA Search

rpigca0_014681.y1

Sequence:


               
               GTAGCTGTTTTATATAATTTGGCTGGGGTTTCCCCCACTCATCTAAATGTAGCATATTAA
TGCCAATTTAAAGATCAAATATTATGAATAATAGACATGCAATTTTTTGTCTAATAAATA
TCTATTAATCATCTCAAAGGGGTACAGATTCTTTAGGATATACATTTCGTCATGACTAAA
TGGGTCAGAATTCATCAGCAGTTTGGGAAGACAAGTATAAAATGGGACCAGTAGCTGAAT
TTCATTAAGTTGTCACTTCTTTCCATTTTTTAAGGCAATTTTCCACTCATTATATCCAAT
TTCTTTCTAAAAAGAAATAACCTCAGAATATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAGCTGTTTTATATAATTTGGCTGGGGTTTCCCCCACTCATCTAAATGTAGCATATTAA
TGCCAATTTAAAGATCAAATATTATGAATAATAGACATGCAATTTTTTGTCTAATAAATA
TCTATTAATCATCTCAAAGGGGTACAGATTCTTTAGGATATACATTTCGTCATGACTAAA
TGGGTCAGAATTCATCAGCAGTTTGGGAAGACAAGTATAAAATGGGACCAGTAGCTGAAT
TTCATTAAGTTGTCACTTCTTTCCATTTTTTAAGGCAATTTTCCACTCATTATATCCAAT
TTCTTTCTAAAAAGAAATAACCTCAGAATATCA

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               3-332, gnl|bosTau2|chr27 (9207643-9207975)
               

               
               3-332, gnl|canFam2|chr16 (47866570-47866160)
               

               
               3-332, gnl|dasNov1|scaffold_91161 (392-18)
               

               
               3-332, gnl|echTel1|scaffold_320713 (276145-276527)
               

               
               3-332, gnl|hg17|chr4 (187048929-187049337)
               

               
               3-332, gnl|Hg17|chr4 (187049307-187048975)
               

               
               3-332, gnl|loxAfr1|scaffold_698 (17243-16848)
               

               
               3-332, gnl|mm7|chr8 (44455595-44455185)
               

               
               3-332, gnl|Mm7|chr8 (44455210-44455546)
               

               
               3-332, gnl|monDom2|scaffold_9 (68196597-68197044)
               

               
               3-332, gnl|oryCun1|scaffold_201080 (3582-3175)
               

               
               3-332, gnl|panTro1|chr3 (205254435-205254843)
               

               
               3-332, gnl|rheMac2|chr5 (177874621-177875027)
               

               
               3-332, gnl|rn3|chr16 (49863707-49864107)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-332, gnl|bosTau2|chr27 (9207643-9207975)
               

               
               3-332, gnl|canFam2|chr16 (47866570-47866160)
               

               
               3-332, gnl|dasNov1|scaffold_91161 (392-18)
               

               
               3-332, gnl|echTel1|scaffold_320713 (276145-276527)
               

               
               3-332, gnl|hg17|chr4 (187048929-187049337)
               

               
               3-332, gnl|Hg17|chr4 (187049307-187048975)
               

               
               3-332, gnl|loxAfr1|scaffold_698 (17243-16848)
               

               
               3-332, gnl|mm7|chr8 (44455595-44455185)
               

               
               3-332, gnl|Mm7|chr8 (44455210-44455546)
               

               
               3-332, gnl|monDom2|scaffold_9 (68196597-68197044)
               

               
               3-332, gnl|oryCun1|scaffold_201080 (3582-3175)
               

               
               3-332, gnl|panTro1|chr3 (205254435-205254843)
               

               
               3-332, gnl|rheMac2|chr5 (177874621-177875027)
               

               
               3-332, gnl|rn3|chr16 (49863707-49864107)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	3-332, gnl\|bosTau2\|chr27 (9207643-9207975)
	3-332, gnl\|canFam2\|chr16 (47866570-47866160)
	3-332, gnl\|dasNov1\|scaffold_91161 (392-18)
	3-332, gnl\|echTel1\|scaffold_320713 (276145-276527)
	3-332, gnl\|hg17\|chr4 (187048929-187049337)
	3-332, gnl\|Hg17\|chr4 (187049307-187048975)
	3-332, gnl\|loxAfr1\|scaffold_698 (17243-16848)
	3-332, gnl\|mm7\|chr8 (44455595-44455185)
	3-332, gnl\|Mm7\|chr8 (44455210-44455546)
	3-332, gnl\|monDom2\|scaffold_9 (68196597-68197044)
	3-332, gnl\|oryCun1\|scaffold_201080 (3582-3175)
	3-332, gnl\|panTro1\|chr3 (205254435-205254843)
	3-332, gnl\|rheMac2\|chr5 (177874621-177875027)
	3-332, gnl\|rn3\|chr16 (49863707-49864107)