Non-Coding RNA Search

rpigca0_014813.y1

Sequence:


               
               CGCCTTGGATGAATTCTGGCCCTTCGGAGAGTCGGCCCTACCACGGCATGCACGGCGGTG
GGCCCGGTGGGCCCGGAGGTGGGCCCCATAGCTTCCCGCACCCGTTACCCAGCCTGACAG
GTGGGCATGGTGGACATCCCATGCAGCACAACCCCAACGGACCCCCACCCCCGTGGATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCTTGGATGAATTCTGGCCCTTCGGAGAGTCGGCCCTACCACGGCATGCACGGCGGTG
GGCCCGGTGGGCCCGGAGGTGGGCCCCATAGCTTCCCGCACCCGTTACCCAGCCTGACAG
GTGGGCATGGTGGACATCCCATGCAGCACAACCCCAACGGACCCCCACCCCCGTGGATGC

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

Help | Less info


               
               3-180, gnl|bosTau2|chr29 (33917253-33917076)
               

               
               3-180, gnl|canFam2|chr18 (55415545-55415310)
               

               
               3-180, gnl|danRer3|chr7 (15243232-15243426)
               

               
               3-180, gnl|dasNov1|scaffold_12601 (15791-16026)
               

               
               3-180, gnl|echTel1|scaffold_323783 (39454-39219)
               

               
               3-180, gnl|fr1|chrUn (106870800-106871008)
               

               
               3-180, gnl|hg17|chr11 (64291660-64291895)
               

               
               3-180, gnl|Hg17|chr11 (64291862-64291685)
               

               
               3-180, gnl|loxAfr1|scaffold_57119 (11271-11036)
               

               
               3-180, gnl|mm7|chr19 (6269050-6268815)
               

               
               3-180, gnl|Mm7|chr19 (6268846-6269023)
               

               
               3-180, gnl|monDom2|scaffold_482 (28318-28084)
               

               
               3-180, gnl|panTro1|chr9 (65509617-65509852)
               

               
               3-180, gnl|rheMac2|chr14 (9689147-9688912)
               

               
               3-180, gnl|rn3|chr1 (209315068-209314833)
               

               
               3-180, gnl|tetNig1|chrUn_random (23993874-23993686)
               

               
               3-180, gnl|xenTro1|scaffold_145 (581374-581211)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-180, gnl|bosTau2|chr29 (33917253-33917076)
               

               
               3-180, gnl|canFam2|chr18 (55415545-55415310)
               

               
               3-180, gnl|danRer3|chr7 (15243232-15243426)
               

               
               3-180, gnl|dasNov1|scaffold_12601 (15791-16026)
               

               
               3-180, gnl|echTel1|scaffold_323783 (39454-39219)
               

               
               3-180, gnl|fr1|chrUn (106870800-106871008)
               

               
               3-180, gnl|hg17|chr11 (64291660-64291895)
               

               
               3-180, gnl|Hg17|chr11 (64291862-64291685)
               

               
               3-180, gnl|loxAfr1|scaffold_57119 (11271-11036)
               

               
               3-180, gnl|mm7|chr19 (6269050-6268815)
               

               
               3-180, gnl|Mm7|chr19 (6268846-6269023)
               

               
               3-180, gnl|monDom2|scaffold_482 (28318-28084)
               

               
               3-180, gnl|panTro1|chr9 (65509617-65509852)
               

               
               3-180, gnl|rheMac2|chr14 (9689147-9688912)
               

               
               3-180, gnl|rn3|chr1 (209315068-209314833)
               

               
               3-180, gnl|tetNig1|chrUn_random (23993874-23993686)
               

               
               3-180, gnl|xenTro1|scaffold_145 (581374-581211)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               clu (0.119646)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	3-180, gnl\|bosTau2\|chr29 (33917253-33917076)
	3-180, gnl\|canFam2\|chr18 (55415545-55415310)
	3-180, gnl\|danRer3\|chr7 (15243232-15243426)
	3-180, gnl\|dasNov1\|scaffold_12601 (15791-16026)
	3-180, gnl\|echTel1\|scaffold_323783 (39454-39219)
	3-180, gnl\|fr1\|chrUn (106870800-106871008)
	3-180, gnl\|hg17\|chr11 (64291660-64291895)
	3-180, gnl\|Hg17\|chr11 (64291862-64291685)
	3-180, gnl\|loxAfr1\|scaffold_57119 (11271-11036)
	3-180, gnl\|mm7\|chr19 (6269050-6268815)
	3-180, gnl\|Mm7\|chr19 (6268846-6269023)
	3-180, gnl\|monDom2\|scaffold_482 (28318-28084)
	3-180, gnl\|panTro1\|chr9 (65509617-65509852)
	3-180, gnl\|rheMac2\|chr14 (9689147-9688912)
	3-180, gnl\|rn3\|chr1 (209315068-209314833)
	3-180, gnl\|tetNig1\|chrUn_random (23993874-23993686)
	3-180, gnl\|xenTro1\|scaffold_145 (581374-581211)