rpigca_0205.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAATGATATAATATGCTCCAGGCAAGTCACTTACATTACATGCCATTCTCTTCATCTGT AAAATCACGGGGTTGAAACTAGAGCTGGACAGAAAATTAGAGGTCACCTGATATTCTGTG ATTCTAGGAATCCTTAGGAAATTTTTACAGATGGTCAGAGTTGATTTTTCTCAAATCTAC TACCCTTGGTGGAAACTCTCACAGTGCCTTGCACACAGTAGATGTTTGATTTGCCAACTG GCTTTTAGCCCATGTGTGTTGGTATCACACAGACTCAAAGAATCTGAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAATGATATAATATGCTCCAGGCAAGTCACTTACATTACATGCCATTCTCTTCATCTGT AAAATCACGGGGTTGAAACTAGAGCTGGACAGAAAATTAGAGGTCACCTGATATTCTGTG ATTCTAGGAATCCTTAGGAAATTTTTACAGATGGTCAGAGTTGATTTTTCTCAAATCTAC TACCCTTGGTGGAAACTCTCACAGTGCCTTGCACACAGTAGATGTTTGATTTGCCAACTG GCTTTTAGCCCATGTGTGTTGGTATCACACAGACTCAAAGAATCTGAT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 41-154, + strand, RNAz p=0.801095 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 41-154, + strand, RNAz p=0.801095 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-288, gnl|bosTau2|chr24 (6454345-6454053) | |
| 1-288, gnl|canFam2|chrX (60309736-60309950) | |
| 1-288, gnl|canFam2|chrX (60309950-60309736) | |
| 1-288, gnl|echTel1|scaffold_182385 (3250-3036) | |
| 1-288, gnl|echTel1|scaffold_182385 (3036-3250) | |
| 1-288, gnl|hg17|chrX (72687919-72688126) | |
| 1-288, gnl|hg17|chrX (36521445-36521661) | |
| 1-288, gnl|Hg17|chrX (72687818-72688103) | |
| 1-288, gnl|loxAfr1|scaffold_13653 (17139-17354) | |
| 1-288, gnl|loxAfr1|scaffold_13653 (17354-17139) | |
| 1-288, gnl|mm7|chrX (98721376-98721585) | |
| 1-288, gnl|mm7|chrX (98721585-98721376) | |
| 1-288, gnl|Mm7|chrX (98721273-98721562) | |
| 1-288, gnl|monDom2|scaffold_207 (80583-80442) | |
| 1-288, gnl|oryCun1|scaffold_203799 (11918-12129) | |
| 1-288, gnl|oryCun1|scaffold_203799 (12129-11918) | |
| 1-288, gnl|panTro1|chrX (75097226-75097435) | |
| 1-288, gnl|panTro1|chrX (75097435-75097226) | |
| 1-288, gnl|rheMac2|chrX (72783487-72783703) | |
| 1-288, gnl|rheMac2|chrX (72783703-72783487) | |
| 1-288, gnl|rn3|chrX (91436837-91437041) | |
| 1-288, gnl|rn3|chrX (91437041-91436837) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-288, gnl|bosTau2|chr24 (6454345-6454053) | |
| 1-288, gnl|canFam2|chrX (60309736-60309950) | |
| 1-288, gnl|canFam2|chrX (60309950-60309736) | |
| 1-288, gnl|echTel1|scaffold_182385 (3250-3036) | |
| 1-288, gnl|echTel1|scaffold_182385 (3036-3250) | |
| 1-288, gnl|hg17|chrX (72687919-72688126) | |
| 1-288, gnl|hg17|chrX (36521445-36521661) | |
| 1-288, gnl|Hg17|chrX (72687818-72688103) | |
| 1-288, gnl|loxAfr1|scaffold_13653 (17139-17354) | |
| 1-288, gnl|loxAfr1|scaffold_13653 (17354-17139) | |
| 1-288, gnl|mm7|chrX (98721376-98721585) | |
| 1-288, gnl|mm7|chrX (98721585-98721376) | |
| 1-288, gnl|Mm7|chrX (98721273-98721562) | |
| 1-288, gnl|monDom2|scaffold_207 (80583-80442) | |
| 1-288, gnl|oryCun1|scaffold_203799 (11918-12129) | |
| 1-288, gnl|oryCun1|scaffold_203799 (12129-11918) | |
| 1-288, gnl|panTro1|chrX (75097226-75097435) | |
| 1-288, gnl|panTro1|chrX (75097435-75097226) | |
| 1-288, gnl|rheMac2|chrX (72783487-72783703) | |
| 1-288, gnl|rheMac2|chrX (72783703-72783487) | |
| 1-288, gnl|rn3|chrX (91436837-91437041) | |
| 1-288, gnl|rn3|chrX (91437041-91436837) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.119646) |