Non-Coding RNA Search

rpigca_0840.y1

Sequence:


               
               ATTAGGAAGCAGTCGAAAGTTTTTGAGCAGGAGCAGAACATGCTGAAAGGGAGTATGAGT
CAGGCAGTGTGCTGTGCAGGAGAGATTGCAGAGGAAGATAGGGAGGTAGGAGGTAGCCAG
CCAAGGGGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTAGGAAGCAGTCGAAAGTTTTTGAGCAGGAGCAGAACATGCTGAAAGGGAGTATGAGT
CAGGCAGTGTGCTGTGCAGGAGAGATTGCAGAGGAAGATAGGGAGGTAGGAGGTAGCCAG
CCAAGGGGTGA

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               3-113, gnl|bosTau2|chr6 (15345910-15346020)
               

               
               3-113, gnl|canFam2|chr32 (14346067-14346398)
               

               
               3-113, gnl|dasNov1|scaffold_8166 (87241-86900)
               

               
               3-113, gnl|hg17|chr4 (89289099-89289473)
               

               
               3-113, gnl|Hg17|chr4 (89289281-89289387)
               

               
               3-113, gnl|mm7|chr5 (103652903-103653230)
               

               
               3-113, gnl|Mm7|chr5 (103653044-103653143)
               

               
               3-113, gnl|oryCun1|scaffold_209869 (45028-45369)
               

               
               3-113, gnl|panTro1|chr3 (105281088-105281462)
               

               
               3-113, gnl|rheMac2|chr5 (80976323-80976772)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-113, gnl|bosTau2|chr6 (15345910-15346020)
               

               
               3-113, gnl|canFam2|chr32 (14346067-14346398)
               

               
               3-113, gnl|dasNov1|scaffold_8166 (87241-86900)
               

               
               3-113, gnl|hg17|chr4 (89289099-89289473)
               

               
               3-113, gnl|Hg17|chr4 (89289281-89289387)
               

               
               3-113, gnl|mm7|chr5 (103652903-103653230)
               

               
               3-113, gnl|Mm7|chr5 (103653044-103653143)
               

               
               3-113, gnl|oryCun1|scaffold_209869 (45028-45369)
               

               
               3-113, gnl|panTro1|chr3 (105281088-105281462)
               

               
               3-113, gnl|rheMac2|chr5 (80976323-80976772)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	3-113, gnl\|bosTau2\|chr6 (15345910-15346020)
	3-113, gnl\|canFam2\|chr32 (14346067-14346398)
	3-113, gnl\|dasNov1\|scaffold_8166 (87241-86900)
	3-113, gnl\|hg17\|chr4 (89289099-89289473)
	3-113, gnl\|Hg17\|chr4 (89289281-89289387)
	3-113, gnl\|mm7\|chr5 (103652903-103653230)
	3-113, gnl\|Mm7\|chr5 (103653044-103653143)
	3-113, gnl\|oryCun1\|scaffold_209869 (45028-45369)
	3-113, gnl\|panTro1\|chr3 (105281088-105281462)
	3-113, gnl\|rheMac2\|chr5 (80976323-80976772)