Non-Coding RNA Search

rpigca_1108.y1

Sequence:


               
               CAGGTGGCCACTGTCCTCAGCAGCACCCACTGGGTGAGGACTGTTTCACTCAGGGCTTGC
TCCTTCCCCGCCCTTCTGGGTGAGGGTTTCATTCAGGGGCCCCAGTGGTTGGGCAGCAGC
GTTTACACGGGAGCAGTGGCCCGCACAGTCCCCAGGTCTGCAAACACTGGACCTTGGTGC
CGAGACCAAGCAAGGTTAAATTGTCCCCCATTGCCTGGGCTGCAGCAACGCAGTGAGAGT
AAACTGTTTATATTCTCCAGCTGCAGAGCCTGTGGCCAAAGGCCTCCTGCAAAGAAATCG
TGGCTCATGGGATGTGAGTGTCTGAGGATGTGGGGTCATCCCCACCCCCCACAGCACTCA
CTGTCACAGCAGGAAAGGAGGGCCCTGGGGAGGCCTGGAGTCTCACACAGGTCAGTCTGG
CCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGTGGCCACTGTCCTCAGCAGCACCCACTGGGTGAGGACTGTTTCACTCAGGGCTTGC
TCCTTCCCCGCCCTTCTGGGTGAGGGTTTCATTCAGGGGCCCCAGTGGTTGGGCAGCAGC
GTTTACACGGGAGCAGTGGCCCGCACAGTCCCCAGGTCTGCAAACACTGGACCTTGGTGC
CGAGACCAAGCAAGGTTAAATTGTCCCCCATTGCCTGGGCTGCAGCAACGCAGTGAGAGT
AAACTGTTTATATTCTCCAGCTGCAGAGCCTGTGGCCAAAGGCCTCCTGCAAAGAAATCG
TGGCTCATGGGATGTGAGTGTCTGAGGATGTGGGGTCATCCCCACCCCCCACAGCACTCA
CTGTCACAGCAGGAAAGGAGGGCCCTGGGGAGGCCTGGAGTCTCACACAGGTCAGTCTGG
CCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               269-388, + strand, RNAz p=0.53979

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               269-388, + strand, RNAz p=0.53979

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               84-417, gnl|bosTau2|chr28 (19724005-19723682)
               

               
               84-417, gnl|Hg17|chr10 (71272481-71272921)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               84-417, gnl|bosTau2|chr28 (19724005-19723682)
               

               
               84-417, gnl|Hg17|chr10 (71272481-71272921)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	84-417, gnl\|bosTau2\|chr28 (19724005-19723682)
	84-417, gnl\|Hg17\|chr10 (71272481-71272921)