Non-Coding RNA Search

rpigca_1134.y1

Sequence:


               
               gaacctgtgtcctcatggttcctagtccgattcgtttctgctgagccacgatgggaactc
cTGGCTGGCCATCCATCCTGAGCCTAGGAACAGATGGCTTCTGAGGGCCGGACTGAGGCT
CAGAGTCACCCCTCTGAGCCCTGTTCTACCCTGTTCCCTCCCATCCCGCCTCCCCCTCTC
TCCACAGGTGCAGACCCATCTGGAGAACCCGACACGCTACCACCTGCAGCAGGCACGCCG
GCAGCAGGTGAAACAGTACCTGTCCACCACCCTTGGGCCCAAGCTGGCTTCCCAGGCCCT
CACCCCACCGCCGGGGGCTGCTAGTGCCCAGCCGCTCCCCGCCCCTGAGGCCACCCACGC
TACTGGCCCCACAGGCAGTGCTCCCAACAGCCCCATGGCGCTGCTCACCATCGGGTCTAA
CTCAGAGAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               gaacctgtgtcctcatggttcctagtccgattcgtttctgctgagccacgatgggaactc
cTGGCTGGCCATCCATCCTGAGCCTAGGAACAGATGGCTTCTGAGGGCCGGACTGAGGCT
CAGAGTCACCCCTCTGAGCCCTGTTCTACCCTGTTCCCTCCCATCCCGCCTCCCCCTCTC
TCCACAGGTGCAGACCCATCTGGAGAACCCGACACGCTACCACCTGCAGCAGGCACGCCG
GCAGCAGGTGAAACAGTACCTGTCCACCACCCTTGGGCCCAAGCTGGCTTCCCAGGCCCT
CACCCCACCGCCGGGGGCTGCTAGTGCCCAGCCGCTCCCCGCCCCTGAGGCCACCCACGC
TACTGGCCCCACAGGCAGTGCTCCCAACAGCCCCATGGCGCTGCTCACCATCGGGTCTAA
CTCAGAGAAGG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               65-422, - strand, RNAz p=0.998915
               

               
               96-431, - strand, RNAz p=0.996991

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               65-422, - strand, RNAz p=0.998915
               

               
               96-431, - strand, RNAz p=0.996991

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               105-153, + strand, RNAmicro p=0.998632
               

               
               306-407, - strand, RNAmicro p=0.996764

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               105-153, + strand, RNAmicro p=0.998632
               

               
               306-407, - strand, RNAmicro p=0.996764

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               65-431, gnl|bosTau2|chrX (26118815-26119182)
               

               
               65-431, gnl|canFam2|chrX (42137423-42137722)
               

               
               65-431, gnl|danRer3|chr11 (25764266-25764039)
               

               
               65-431, gnl|dasNov1|scaffold_57307 (548-249)
               

               
               65-431, gnl|echTel1|scaffold_258771 (2020-2261)
               

               
               65-431, gnl|fr1|chrUn (39288661-39288418)
               

               
               65-431, gnl|galGal2|chr26 (3409476-3409744)
               

               
               65-431, gnl|hg17|chrX (48651964-48652263)
               

               
               65-431, gnl|Hg17|chrX (48652340-48651973)
               

               
               65-431, gnl|loxAfr1|scaffold_1767 (49433-49694)
               

               
               65-431, gnl|mm7|chrX (6200843-6200548)
               

               
               65-431, gnl|Mm7|chrX (6200477-6200832)
               

               
               65-431, gnl|monDom2|scaffold_134 (171403-171115)
               

               
               65-431, gnl|oryCun1|scaffold_214886 (43622-43878)
               

               
               65-431, gnl|panTro1|chrX_random (54839309-54839010)
               

               
               65-431, gnl|rheMac2|chrX (46896231-46896530)
               

               
               65-431, gnl|rn3|chrX (26829689-26829984)
               

               
               65-431, gnl|tetNig1|chr11 (9287190-9286955)
               

               
               65-431, gnl|xenTro1|scaffold_6224 (9841-10093)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               65-431, gnl|bosTau2|chrX (26118815-26119182)
               

               
               65-431, gnl|canFam2|chrX (42137423-42137722)
               

               
               65-431, gnl|danRer3|chr11 (25764266-25764039)
               

               
               65-431, gnl|dasNov1|scaffold_57307 (548-249)
               

               
               65-431, gnl|echTel1|scaffold_258771 (2020-2261)
               

               
               65-431, gnl|fr1|chrUn (39288661-39288418)
               

               
               65-431, gnl|galGal2|chr26 (3409476-3409744)
               

               
               65-431, gnl|hg17|chrX (48651964-48652263)
               

               
               65-431, gnl|Hg17|chrX (48652340-48651973)
               

               
               65-431, gnl|loxAfr1|scaffold_1767 (49433-49694)
               

               
               65-431, gnl|mm7|chrX (6200843-6200548)
               

               
               65-431, gnl|Mm7|chrX (6200477-6200832)
               

               
               65-431, gnl|monDom2|scaffold_134 (171403-171115)
               

               
               65-431, gnl|oryCun1|scaffold_214886 (43622-43878)
               

               
               65-431, gnl|panTro1|chrX_random (54839309-54839010)
               

               
               65-431, gnl|rheMac2|chrX (46896231-46896530)
               

               
               65-431, gnl|rn3|chrX (26829689-26829984)
               

               
               65-431, gnl|tetNig1|chr11 (9287190-9286955)
               

               
               65-431, gnl|xenTro1|scaffold_6224 (9841-10093)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	65-422, - strand, RNAz p=0.998915
	96-431, - strand, RNAz p=0.996991

	105-153, + strand, RNAmicro p=0.998632
	306-407, - strand, RNAmicro p=0.996764

	65-431, gnl\|bosTau2\|chrX (26118815-26119182)
	65-431, gnl\|canFam2\|chrX (42137423-42137722)
	65-431, gnl\|danRer3\|chr11 (25764266-25764039)
	65-431, gnl\|dasNov1\|scaffold_57307 (548-249)
	65-431, gnl\|echTel1\|scaffold_258771 (2020-2261)
	65-431, gnl\|fr1\|chrUn (39288661-39288418)
	65-431, gnl\|galGal2\|chr26 (3409476-3409744)
	65-431, gnl\|hg17\|chrX (48651964-48652263)
	65-431, gnl\|Hg17\|chrX (48652340-48651973)
	65-431, gnl\|loxAfr1\|scaffold_1767 (49433-49694)
	65-431, gnl\|mm7\|chrX (6200843-6200548)
	65-431, gnl\|Mm7\|chrX (6200477-6200832)
	65-431, gnl\|monDom2\|scaffold_134 (171403-171115)
	65-431, gnl\|oryCun1\|scaffold_214886 (43622-43878)
	65-431, gnl\|panTro1\|chrX_random (54839309-54839010)
	65-431, gnl\|rheMac2\|chrX (46896231-46896530)
	65-431, gnl\|rn3\|chrX (26829689-26829984)
	65-431, gnl\|tetNig1\|chr11 (9287190-9286955)
	65-431, gnl\|xenTro1\|scaffold_6224 (9841-10093)