Non-Coding RNA Search

rpigca_1184.y1

Sequence:


               
               TCTGTCCACACCTGTTGCATCACCTCGCAGATTGTCCAGAGGCACTTCTCTATCTGAGTC
ATGGAAACCCATTGACACTAAACTGTTCTCCCTTCTGAGCTGTTCGTCTCCTTCATCTCA
AGGCCCTGCTTTGTTCCTGGTTACTGCTCCTGAGAGTGATCTCCAGTCTCCTGGTCCCTA
GGATGGTCATGTGATCAGTTATTTCACTGAGTGCCTCTCTCTAGCCTTGCTGCCCTCCTT
GGCCATAATACCTAGAACACACTGAGCAGAGTGGGCTTCACCCCAGACATCTCCCACATG
CTTCTGCTCACCTCTTAGCTGGGCAGTTTAAGTCTCAAAGTCACCCAGAATTGCTAACTG
GTACCCTTGTGAACCATTGTGAGGTACAATTTTGTATCTATCTTGTTACCCAAACTACTT
ACATATCTTAACTGATGACAGTGTAAATTATTATTCCATACAGGAAAGCAATTTGGAATG
AAAATTGTAAGAAGGGTAAAAAATGTGCTGTCCTATGTACCTCCATTCCACACACCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGTCCACACCTGTTGCATCACCTCGCAGATTGTCCAGAGGCACTTCTCTATCTGAGTC
ATGGAAACCCATTGACACTAAACTGTTCTCCCTTCTGAGCTGTTCGTCTCCTTCATCTCA
AGGCCCTGCTTTGTTCCTGGTTACTGCTCCTGAGAGTGATCTCCAGTCTCCTGGTCCCTA
GGATGGTCATGTGATCAGTTATTTCACTGAGTGCCTCTCTCTAGCCTTGCTGCCCTCCTT
GGCCATAATACCTAGAACACACTGAGCAGAGTGGGCTTCACCCCAGACATCTCCCACATG
CTTCTGCTCACCTCTTAGCTGGGCAGTTTAAGTCTCAAAGTCACCCAGAATTGCTAACTG
GTACCCTTGTGAACCATTGTGAGGTACAATTTTGTATCTATCTTGTTACCCAAACTACTT
ACATATCTTAACTGATGACAGTGTAAATTATTATTCCATACAGGAAAGCAATTTGGAATG
AAAATTGTAAGAAGGGTAAAAAATGTGCTGTCCTATGTACCTCCATTCCACACACCC

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               39-142, - strand, RNAz p=0.887539
               

               
               185-302, - strand, RNAz p=0.554977
               

               
               418-537, - strand, RNAz p=0.739852

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-142, - strand, RNAz p=0.887539
               

               
               185-302, - strand, RNAz p=0.554977
               

               
               418-537, - strand, RNAz p=0.739852

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               39-537, gnl|bosTau2|chr8 (50576348-50576832)
               

               
               39-537, gnl|canFam2|chr11 (63840194-63840760)
               

               
               39-537, gnl|dasNov1|scaffold_89213 (3708-3155)
               

               
               39-537, gnl|echTel1|scaffold_322009 (114700-115212)
               

               
               39-537, gnl|hg17|chr9 (104676118-104676659)
               

               
               39-537, gnl|Hg17|chr9 (104676624-104676125)
               

               
               39-537, gnl|loxAfr1|scaffold_2236 (51078-50554)
               

               
               39-537, gnl|panTro1|chr11 (88992816-88993357)
               

               
               39-537, gnl|rheMac2|chr15 (31405489-31404961)
               

               
               39-537, gnl|rn3|chr5 (70545470-70546045)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               39-537, gnl|bosTau2|chr8 (50576348-50576832)
               

               
               39-537, gnl|canFam2|chr11 (63840194-63840760)
               

               
               39-537, gnl|dasNov1|scaffold_89213 (3708-3155)
               

               
               39-537, gnl|echTel1|scaffold_322009 (114700-115212)
               

               
               39-537, gnl|hg17|chr9 (104676118-104676659)
               

               
               39-537, gnl|Hg17|chr9 (104676624-104676125)
               

               
               39-537, gnl|loxAfr1|scaffold_2236 (51078-50554)
               

               
               39-537, gnl|panTro1|chr11 (88992816-88993357)
               

               
               39-537, gnl|rheMac2|chr15 (31405489-31404961)
               

               
               39-537, gnl|rn3|chr5 (70545470-70546045)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	39-142, - strand, RNAz p=0.887539
	185-302, - strand, RNAz p=0.554977
	418-537, - strand, RNAz p=0.739852

	39-537, gnl\|bosTau2\|chr8 (50576348-50576832)
	39-537, gnl\|canFam2\|chr11 (63840194-63840760)
	39-537, gnl\|dasNov1\|scaffold_89213 (3708-3155)
	39-537, gnl\|echTel1\|scaffold_322009 (114700-115212)
	39-537, gnl\|hg17\|chr9 (104676118-104676659)
	39-537, gnl\|Hg17\|chr9 (104676624-104676125)
	39-537, gnl\|loxAfr1\|scaffold_2236 (51078-50554)
	39-537, gnl\|panTro1\|chr11 (88992816-88993357)
	39-537, gnl\|rheMac2\|chr15 (31405489-31404961)
	39-537, gnl\|rn3\|chr5 (70545470-70546045)