Non-Coding RNA Search

rpigca_1375.y1

Sequence:


               
               CTGACTCCAAGGGCAATAGCAGTAAAATATCACCCCAGTGTGAAACTTACCAGTGAGAGT
GGGTTGGACAGTCGGTAGATCTTTATTTACCCAAAGGCAAATGTATTTGATGTATTAGCC
TGAACTCTCCAAGGTGGGGTGTTGTATGTTTATTTGCTCTTAAGGGGTTACGCCCATCGG
TCTGTCCTATAACTGCTGAATCTCTGCTATTATTGGAGTTTGCTTTTTCCAGGAGAGTGC
CAGCAGTTCATAGAAACATGCAGAGTTACATAATGGTCCAACTAGTCCAAGAAGAGCCTC
CTTCTATGACAGGATTCAACACAGCTAGACAGGGAAGTCAGAAAGCAATAAGGCAAGAAT
GTGTCCCTGTACCAACTCGAACTTACCCAATCCTTGAATTTAAAAAAAAAATGTATTTAG
TTCATGTCTGCCTATGAGAAATTGTTACCCATTTCTTGAATAAAAATTGTTCCATTTCCA
GTCCCTTATGCCACTAATTGATCCTTTTAGTTATATACTTGCTTAGAAGATTTATCATCC
CAAAGTCACTCCAAAGAAGTTATATACTGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGACTCCAAGGGCAATAGCAGTAAAATATCACCCCAGTGTGAAACTTACCAGTGAGAGT
GGGTTGGACAGTCGGTAGATCTTTATTTACCCAAAGGCAAATGTATTTGATGTATTAGCC
TGAACTCTCCAAGGTGGGGTGTTGTATGTTTATTTGCTCTTAAGGGGTTACGCCCATCGG
TCTGTCCTATAACTGCTGAATCTCTGCTATTATTGGAGTTTGCTTTTTCCAGGAGAGTGC
CAGCAGTTCATAGAAACATGCAGAGTTACATAATGGTCCAACTAGTCCAAGAAGAGCCTC
CTTCTATGACAGGATTCAACACAGCTAGACAGGGAAGTCAGAAAGCAATAAGGCAAGAAT
GTGTCCCTGTACCAACTCGAACTTACCCAATCCTTGAATTTAAAAAAAAAATGTATTTAG
TTCATGTCTGCCTATGAGAAATTGTTACCCATTTCTTGAATAAAAATTGTTCCATTTCCA
GTCCCTTATGCCACTAATTGATCCTTTTAGTTATATACTTGCTTAGAAGATTTATCATCC
CAAAGTCACTCCAAAGAAGTTATATACTGAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               24-143, - strand, RNAz p=0.703896

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               24-143, - strand, RNAz p=0.703896

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-572, gnl|bosTau2|chr21 (17535615-17535057)
               

               
               1-572, gnl|canFam2|chr3 (58455498-58456331)
               

               
               1-572, gnl|dasNov1|scaffold_10827 (9701-10541)
               

               
               1-572, gnl|echTel1|scaffold_322984 (6458-5609)
               

               
               1-572, gnl|hg17|chr15 (82390147-82390994)
               

               
               1-572, gnl|Hg17|chr15 (82390641-82391212)
               

               
               1-572, gnl|loxAfr1|scaffold_25066 (18892-18049)
               

               
               1-572, gnl|mm7|chr7 (78475586-78476399)
               

               
               1-572, gnl|Mm7|chr7 (78476072-78476596)
               

               
               1-572, gnl|monDom2|scaffold_45 (3139867-3140755)
               

               
               1-572, gnl|oryCun1|scaffold_84186 (1092-1906)
               

               
               1-572, gnl|panTro1|chr16 (83193884-83194731)
               

               
               1-572, gnl|rheMac2|chr7 (62561711-62560861)
               

               
               1-572, gnl|rn3|chr1 (138880956-138881790)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-572, gnl|bosTau2|chr21 (17535615-17535057)
               

               
               1-572, gnl|canFam2|chr3 (58455498-58456331)
               

               
               1-572, gnl|dasNov1|scaffold_10827 (9701-10541)
               

               
               1-572, gnl|echTel1|scaffold_322984 (6458-5609)
               

               
               1-572, gnl|hg17|chr15 (82390147-82390994)
               

               
               1-572, gnl|Hg17|chr15 (82390641-82391212)
               

               
               1-572, gnl|loxAfr1|scaffold_25066 (18892-18049)
               

               
               1-572, gnl|mm7|chr7 (78475586-78476399)
               

               
               1-572, gnl|Mm7|chr7 (78476072-78476596)
               

               
               1-572, gnl|monDom2|scaffold_45 (3139867-3140755)
               

               
               1-572, gnl|oryCun1|scaffold_84186 (1092-1906)
               

               
               1-572, gnl|panTro1|chr16 (83193884-83194731)
               

               
               1-572, gnl|rheMac2|chr7 (62561711-62560861)
               

               
               1-572, gnl|rn3|chr1 (138880956-138881790)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	1-572, gnl\|bosTau2\|chr21 (17535615-17535057)
	1-572, gnl\|canFam2\|chr3 (58455498-58456331)
	1-572, gnl\|dasNov1\|scaffold_10827 (9701-10541)
	1-572, gnl\|echTel1\|scaffold_322984 (6458-5609)
	1-572, gnl\|hg17\|chr15 (82390147-82390994)
	1-572, gnl\|Hg17\|chr15 (82390641-82391212)
	1-572, gnl\|loxAfr1\|scaffold_25066 (18892-18049)
	1-572, gnl\|mm7\|chr7 (78475586-78476399)
	1-572, gnl\|Mm7\|chr7 (78476072-78476596)
	1-572, gnl\|monDom2\|scaffold_45 (3139867-3140755)
	1-572, gnl\|oryCun1\|scaffold_84186 (1092-1906)
	1-572, gnl\|panTro1\|chr16 (83193884-83194731)
	1-572, gnl\|rheMac2\|chr7 (62561711-62560861)
	1-572, gnl\|rn3\|chr1 (138880956-138881790)