rpigca_1604.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCATTTTTGCAATTAAAGTAGACAACTATGACAAAAACCTGATTTTAAAACTCCACAACT GGAGGCATTTGAGTTTAAAAAACAGGTACATAAGTAGTTTTTTAGAAAGCCAAATATTGG GATTGGTTTTAAAAATCAAGTTAATATTCTTTTGTATATGCGACTTAAATGTTTATTAAG TGGTCCTATAATTTACTTTCAGTTTCTAAAATGAAGATTGAAGATTGATTATCTTGTTTC CCATGGTAATATGGGCAAAAGTCTTTTTCTACATGTTAAAAATCATTTTTAGTCATTTTA CTTTTGAAAACTAGGAATTAGGTTAGCCATTTAATTCTTTTTCTGATATGTTAGTTGGTT TAGAGTTTTATATGTGTGCTGTCTTTCTTTAAAGAAAATAACAATAATGTCTTCATTATT TTCCTCATTGTCTTTTGCTGGAAAAGACCGAGACAGGGTACCCCTAACAGGCTTTTATAC TCCAGTGGTGGGTCTCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCATTTTTGCAATTAAAGTAGACAACTATGACAAAAACCTGATTTTAAAACTCCACAACT GGAGGCATTTGAGTTTAAAAAACAGGTACATAAGTAGTTTTTTAGAAAGCCAAATATTGG GATTGGTTTTAAAAATCAAGTTAATATTCTTTTGTATATGCGACTTAAATGTTTATTAAG TGGTCCTATAATTTACTTTCAGTTTCTAAAATGAAGATTGAAGATTGATTATCTTGTTTC CCATGGTAATATGGGCAAAAGTCTTTTTCTACATGTTAAAAATCATTTTTAGTCATTTTA CTTTTGAAAACTAGGAATTAGGTTAGCCATTTAATTCTTTTTCTGATATGTTAGTTGGTT TAGAGTTTTATATGTGTGCTGTCTTTCTTTAAAGAAAATAACAATAATGTCTTCATTATT TTCCTCATTGTCTTTTGCTGGAAAAGACCGAGACAGGGTACCCCTAACAGGCTTTTATAC TCCAGTGGTGGGTCTCTT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 354-459, - strand, RNAz p=0.998501 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 354-459, - strand, RNAz p=0.998501 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 1-141, gnl|bosTau2|chrX (37707322-37707176) | |
| 1-141, gnl|canFam2|chrX (19571274-19571452) | |
| 1-141, gnl|dasNov1|scaffold_13242 (14792-14621) | |
| 1-141, gnl|echTel1|scaffold_274518 (8711-8902) | |
| 1-141, gnl|hg17|chrX (23763789-23763962) | |
| 1-141, gnl|Hg17|chrX (23763991-23763847) | |
| 1-141, gnl|loxAfr1|scaffold_1497 (66628-66462) | |
| 1-141, gnl|mm7|chrX (89662059-89661880) | |
| 1-141, gnl|monDom2|scaffold_48 (7975145-7974866) | |
| 1-141, gnl|oryCun1|scaffold_132095 (7334-7149) | |
| 1-141, gnl|panTro1|chrX (24598235-24598407) | |
| 1-141, gnl|rheMac2|chrX (21796413-21796587) | |
| 1-141, gnl|rn3|chrX (81755081-81754899) | |
| 197-498, gnl|bosTau2|chrX (37706936-37706653) | |
| 197-498, gnl|canFam2|chrX (19569896-19571205) | |
| 197-498, gnl|echTel1|scaffold_274518 (7337-8671) | |
| 197-498, gnl|hg17|chrX (23762457-23763721) | |
| 197-498, gnl|Hg17|chrX (23763789-23763498) | |
| 197-498, gnl|loxAfr1|scaffold_1497 (67932-66673) | |
| 197-498, gnl|mm7|chrX (89663356-89662125) | |
| 197-498, gnl|Mm7|chrX (89662057-89662331) | |
| 197-498, gnl|monDom2|scaffold_48 (7976604-7975264) | |
| 197-498, gnl|oryCun1|scaffold_132095 (9001-7729) | |
| 197-498, gnl|panTro1|chrX (24596902-24598169) | |
| 197-498, gnl|rheMac2|chrX (21795073-21796344) | |
| 197-498, gnl|rn3|chrX (81756390-81755147) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-141, gnl|bosTau2|chrX (37707322-37707176) | |
| 1-141, gnl|canFam2|chrX (19571274-19571452) | |
| 1-141, gnl|dasNov1|scaffold_13242 (14792-14621) | |
| 1-141, gnl|echTel1|scaffold_274518 (8711-8902) | |
| 1-141, gnl|hg17|chrX (23763789-23763962) | |
| 1-141, gnl|Hg17|chrX (23763991-23763847) | |
| 1-141, gnl|loxAfr1|scaffold_1497 (66628-66462) | |
| 1-141, gnl|mm7|chrX (89662059-89661880) | |
| 1-141, gnl|monDom2|scaffold_48 (7975145-7974866) | |
| 1-141, gnl|oryCun1|scaffold_132095 (7334-7149) | |
| 1-141, gnl|panTro1|chrX (24598235-24598407) | |
| 1-141, gnl|rheMac2|chrX (21796413-21796587) | |
| 1-141, gnl|rn3|chrX (81755081-81754899) | |
| 197-498, gnl|bosTau2|chrX (37706936-37706653) | |
| 197-498, gnl|canFam2|chrX (19569896-19571205) | |
| 197-498, gnl|echTel1|scaffold_274518 (7337-8671) | |
| 197-498, gnl|hg17|chrX (23762457-23763721) | |
| 197-498, gnl|Hg17|chrX (23763789-23763498) | |
| 197-498, gnl|loxAfr1|scaffold_1497 (67932-66673) | |
| 197-498, gnl|mm7|chrX (89663356-89662125) | |
| 197-498, gnl|Mm7|chrX (89662057-89662331) | |
| 197-498, gnl|monDom2|scaffold_48 (7976604-7975264) | |
| 197-498, gnl|oryCun1|scaffold_132095 (9001-7729) | |
| 197-498, gnl|panTro1|chrX (24596902-24598169) | |
| 197-498, gnl|rheMac2|chrX (21795073-21796344) | |
| 197-498, gnl|rn3|chrX (81756390-81755147) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.119646) |