Non-Coding RNA Search

rpigca_1606.y1

Sequence:


               
               CAGAAAAGACAGCCCCCTCCATCACAAAGGTTCAAAGCCCCAAACGAGCTTCTGCTATTG
ACAATGCATTGCTACTGACCCAAAGCAAAAGATTTTCTGAACCTCAAAAAACGACTCCTA
AGAAACTGGACAGCCCGATGGCTGCCTTCTCACGTGGCACATCCCCCCCTCCGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAAAAGACAGCCCCCTCCATCACAAAGGTTCAAAGCCCCAAACGAGCTTCTGCTATTG
ACAATGCATTGCTACTGACCCAAAGCAAAAGATTTTCTGAACCTCAAAAAACGACTCCTA
AGAAACTGGACAGCCCGATGGCTGCCTTCTCACGTGGCACATCCCCCCCTCCGT

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-172, gnl|bosTau2|chr9 (49808085-49808256)
               

               
               1-172, gnl|canFam2|chr1 (42512946-42513328)
               

               
               1-172, gnl|fr1|chrUn (23098509-23098235)
               

               
               1-172, gnl|galGal2|chr3 (46733277-46733653)
               

               
               1-172, gnl|hg17|chr6 (148906840-148907222)
               

               
               1-172, gnl|Hg17|chr6 (148906905-148907076)
               

               
               1-172, gnl|loxAfr1|scaffold_4410 (81747-82129)
               

               
               1-172, gnl|mm7|chr10 (8429853-8429489)
               

               
               1-172, gnl|Mm7|chr10 (8429786-8429618)
               

               
               1-172, gnl|monDom2|scaffold_0 (57713221-57712852)
               

               
               1-172, gnl|panTro1|chr5 (152350965-152351347)
               

               
               1-172, gnl|rheMac2|chr4 (114766092-114765710)
               

               
               1-172, gnl|rn3|chr1 (3327563-3327196)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-172, gnl|bosTau2|chr9 (49808085-49808256)
               

               
               1-172, gnl|canFam2|chr1 (42512946-42513328)
               

               
               1-172, gnl|fr1|chrUn (23098509-23098235)
               

               
               1-172, gnl|galGal2|chr3 (46733277-46733653)
               

               
               1-172, gnl|hg17|chr6 (148906840-148907222)
               

               
               1-172, gnl|Hg17|chr6 (148906905-148907076)
               

               
               1-172, gnl|loxAfr1|scaffold_4410 (81747-82129)
               

               
               1-172, gnl|mm7|chr10 (8429853-8429489)
               

               
               1-172, gnl|Mm7|chr10 (8429786-8429618)
               

               
               1-172, gnl|monDom2|scaffold_0 (57713221-57712852)
               

               
               1-172, gnl|panTro1|chr5 (152350965-152351347)
               

               
               1-172, gnl|rheMac2|chr4 (114766092-114765710)
               

               
               1-172, gnl|rn3|chr1 (3327563-3327196)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	1-172, gnl\|bosTau2\|chr9 (49808085-49808256)
	1-172, gnl\|canFam2\|chr1 (42512946-42513328)
	1-172, gnl\|fr1\|chrUn (23098509-23098235)
	1-172, gnl\|galGal2\|chr3 (46733277-46733653)
	1-172, gnl\|hg17\|chr6 (148906840-148907222)
	1-172, gnl\|Hg17\|chr6 (148906905-148907076)
	1-172, gnl\|loxAfr1\|scaffold_4410 (81747-82129)
	1-172, gnl\|mm7\|chr10 (8429853-8429489)
	1-172, gnl\|Mm7\|chr10 (8429786-8429618)
	1-172, gnl\|monDom2\|scaffold_0 (57713221-57712852)
	1-172, gnl\|panTro1\|chr5 (152350965-152351347)
	1-172, gnl\|rheMac2\|chr4 (114766092-114765710)
	1-172, gnl\|rn3\|chr1 (3327563-3327196)