Non-Coding RNA Search

rpigca_1654.y1

Sequence:


               
               CATTTTCCTTCCCTCAAATAGCACCTTGGGAGCATCTTCCCCCATCAGCTGGTGACAGAC
AGTCTCTGCCAAGTGTTTGGTGACTTCATAGAGGAAAGAGGCTGCCTGGAAATACATTCC
ATTGGATATTAAAGAATGTATTTCCCTGATTTACGCCAGGCAAGGCAGGGATGTCTGAGA
GGCGAGGAACCAATGGCCATATCCACTTTGACTAATGATTAATTATTCTATCTAAAGTGA
TGTTTTCCCATCAACTGAGAGGGTAGAAAAATAGACTACAGCTTGCCAGGTTCGCCCCAC
AGGTCACAGATGTTGCCTCTGCATTTTCAGATTGTATTATCCATTACAGACGGTATCTTC
TCATTTAGAAACATAATTTGTTGTTCTCGCAGACCGGGGAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTTTCCTTCCCTCAAATAGCACCTTGGGAGCATCTTCCCCCATCAGCTGGTGACAGAC
AGTCTCTGCCAAGTGTTTGGTGACTTCATAGAGGAAAGAGGCTGCCTGGAAATACATTCC
ATTGGATATTAAAGAATGTATTTCCCTGATTTACGCCAGGCAAGGCAGGGATGTCTGAGA
GGCGAGGAACCAATGGCCATATCCACTTTGACTAATGATTAATTATTCTATCTAAAGTGA
TGTTTTCCCATCAACTGAGAGGGTAGAAAAATAGACTACAGCTTGCCAGGTTCGCCCCAC
AGGTCACAGATGTTGCCTCTGCATTTTCAGATTGTATTATCCATTACAGACGGTATCTTC
TCATTTAGAAACATAATTTGTTGTTCTCGCAGACCGGGGAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               77-184, - strand, RNAz p=0.661855

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               77-184, - strand, RNAz p=0.661855

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-406, gnl|bosTau2|chr17 (6338406-6338816)
               

               
               1-406, gnl|canFam2|chr15 (47717499-47717895)
               

               
               1-406, gnl|echTel1|scaffold_285121 (32768-32364)
               

               
               1-406, gnl|galGal2|chr4 (31863435-31863868)
               

               
               1-406, gnl|hg17|chr4 (147515533-147515938)
               

               
               1-406, gnl|Hg17|chr4 (147515584-147515987)
               

               
               1-406, gnl|loxAfr1|scaffold_13057 (19866-19459)
               

               
               1-406, gnl|mm7|chr8 (77289117-77288723)
               

               
               1-406, gnl|Mm7|chr8 (77289077-77288670)
               

               
               1-406, gnl|oryCun1|scaffold_213252 (198875-199274)
               

               
               1-406, gnl|panTro1|chr3 (164767625-164768030)
               

               
               1-406, gnl|rheMac2|chr5 (138391534-138391940)
               

               
               1-406, gnl|rn3|chr19 (31098564-31098172)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-406, gnl|bosTau2|chr17 (6338406-6338816)
               

               
               1-406, gnl|canFam2|chr15 (47717499-47717895)
               

               
               1-406, gnl|echTel1|scaffold_285121 (32768-32364)
               

               
               1-406, gnl|galGal2|chr4 (31863435-31863868)
               

               
               1-406, gnl|hg17|chr4 (147515533-147515938)
               

               
               1-406, gnl|Hg17|chr4 (147515584-147515987)
               

               
               1-406, gnl|loxAfr1|scaffold_13057 (19866-19459)
               

               
               1-406, gnl|mm7|chr8 (77289117-77288723)
               

               
               1-406, gnl|Mm7|chr8 (77289077-77288670)
               

               
               1-406, gnl|oryCun1|scaffold_213252 (198875-199274)
               

               
               1-406, gnl|panTro1|chr3 (164767625-164768030)
               

               
               1-406, gnl|rheMac2|chr5 (138391534-138391940)
               

               
               1-406, gnl|rn3|chr19 (31098564-31098172)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	1-406, gnl\|bosTau2\|chr17 (6338406-6338816)
	1-406, gnl\|canFam2\|chr15 (47717499-47717895)
	1-406, gnl\|echTel1\|scaffold_285121 (32768-32364)
	1-406, gnl\|galGal2\|chr4 (31863435-31863868)
	1-406, gnl\|hg17\|chr4 (147515533-147515938)
	1-406, gnl\|Hg17\|chr4 (147515584-147515987)
	1-406, gnl\|loxAfr1\|scaffold_13057 (19866-19459)
	1-406, gnl\|mm7\|chr8 (77289117-77288723)
	1-406, gnl\|Mm7\|chr8 (77289077-77288670)
	1-406, gnl\|oryCun1\|scaffold_213252 (198875-199274)
	1-406, gnl\|panTro1\|chr3 (164767625-164768030)
	1-406, gnl\|rheMac2\|chr5 (138391534-138391940)
	1-406, gnl\|rn3\|chr19 (31098564-31098172)