rpigca_1666.y1
|
TGGACATCAAGCTGACGGGGCAGTTCATTCGGGAGCAACACTGTCTGTTCCGAAGCATCC
CTCAGCCAGACGGAGAAGTGGTGGTCACCCTGGAGCCCTGTGCAGGAGCCGAGACCTACG
TCAACGGGAAACTTGTCACCGAGCCTGTGGTGCTGAAGTCAGGGAATAGGATTGTGATGG
GCAAGAACCACGTCTTCCGCTTCAATCACCCGGAGCAGGCGCGGCTGGAGCGGGAGCGAG
GGGTCCCCCCGCCCCCAGGACCCCCCTCTGAGCCCGTCGACTGGAACTTCGCCCAGAAGG
AGCTGCTGGAGCAGCAGGGGATTGACATCAAGCTGGAGATGGAGAAGAGGCTGCAGGATC
TGGAGAACCAGTACCGGAAAGAAAAGGAAGAGGCTGAC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TGGACATCAAGCTGACGGGGCAGTTCATTCGGGAGCAACACTGTCTGTTCCGAAGCATCC
CTCAGCCAGACGGAGAAGTGGTGGTCACCCTGGAGCCCTGTGCAGGAGCCGAGACCTACG
TCAACGGGAAACTTGTCACCGAGCCTGTGGTGCTGAAGTCAGGGAATAGGATTGTGATGG
GCAAGAACCACGTCTTCCGCTTCAATCACCCGGAGCAGGCGCGGCTGGAGCGGGAGCGAG
GGGTCCCCCCGCCCCCAGGACCCCCCTCTGAGCCCGTCGACTGGAACTTCGCCCAGAAGG
AGCTGCTGGAGCAGCAGGGGATTGACATCAAGCTGGAGATGGAGAAGAGGCTGCAGGATC
TGGAGAACCAGTACCGGAAAGAAAAGGAAGAGGCTGAC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
160-350, gnl|bosTau2|chr19 (14890993-14891183) |
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160-350, gnl|canFam2|chr5 (34614735-34614543) |
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160-350, gnl|danRer3|chrUn (158945421-158945607) |
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160-350, gnl|dasNov1|scaffold_17246 (43057-43248) |
|
160-350, gnl|echTel1|scaffold_308456 (35337-35145) |
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160-350, gnl|fr1|chrUn (203477861-203478047) |
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160-350, gnl|galGal2|chr9 (8755171-8755357) |
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160-350, gnl|hg17|chr17 (4864508-4864700) |
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160-350, gnl|Hg17|chr17 (4864508-4864698) |
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160-350, gnl|loxAfr1|scaffold_122667 (419-227) |
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160-350, gnl|mm7|chr11 (70806393-70806585) |
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160-350, gnl|Mm7|chr11 (70806393-70806583) |
|
160-350, gnl|monDom2|scaffold_177 (389063-388877) |
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160-350, gnl|oryCun1|scaffold_111987 (276-90) |
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160-350, gnl|panTro1|chr19 (5200039-5200231) |
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160-350, gnl|rheMac2|chr16 (4820035-4820227) |
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160-350, gnl|rn3|chr10 (57631397-57631589) |
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160-350, gnl|tetNig1|chr9 (2469425-2469238) |
|
160-350, gnl|xenTro1|scaffold_1396 (56214-56025) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
160-350, gnl|bosTau2|chr19 (14890993-14891183) |
|
160-350, gnl|canFam2|chr5 (34614735-34614543) |
|
160-350, gnl|danRer3|chrUn (158945421-158945607) |
|
160-350, gnl|dasNov1|scaffold_17246 (43057-43248) |
|
160-350, gnl|echTel1|scaffold_308456 (35337-35145) |
|
160-350, gnl|fr1|chrUn (203477861-203478047) |
|
160-350, gnl|galGal2|chr9 (8755171-8755357) |
|
160-350, gnl|hg17|chr17 (4864508-4864700) |
|
160-350, gnl|Hg17|chr17 (4864508-4864698) |
|
160-350, gnl|loxAfr1|scaffold_122667 (419-227) |
|
160-350, gnl|mm7|chr11 (70806393-70806585) |
|
160-350, gnl|Mm7|chr11 (70806393-70806583) |
|
160-350, gnl|monDom2|scaffold_177 (389063-388877) |
|
160-350, gnl|oryCun1|scaffold_111987 (276-90) |
|
160-350, gnl|panTro1|chr19 (5200039-5200231) |
|
160-350, gnl|rheMac2|chr16 (4820035-4820227) |
|
160-350, gnl|rn3|chr10 (57631397-57631589) |
|
160-350, gnl|tetNig1|chr9 (2469425-2469238) |
|
160-350, gnl|xenTro1|scaffold_1396 (56214-56025) |
