Non-Coding RNA Search

rpigca_1987.y1

Sequence:


               
               TCCTCCGCCAGGAGCCCAGAGATTAATTACACGAGGCCTCCGTGGTCATATTAAGCAAAT
GACGATAATTACGGACGGCTGCCGCTGCTGAGAAAGGGAGACAGCAGCTCCTTGGGGGAG
AGGCACAGACCACAGTCCCCGAGGGCAGAAGGGGCCAGAGAGGTCACCTGTGAAGGGCGG
CTGCCTCCTTGGACCAAGGGGGAAACTGAGGCAGGCTCGGCTGGGATGAGATGCGCCCAG
GTCCCATGTGAGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCTCCGCCAGGAGCCCAGAGATTAATTACACGAGGCCTCCGTGGTCATATTAAGCAAAT
GACGATAATTACGGACGGCTGCCGCTGCTGAGAAAGGGAGACAGCAGCTCCTTGGGGGAG
AGGCACAGACCACAGTCCCCGAGGGCAGAAGGGGCCAGAGAGGTCACCTGTGAAGGGCGG
CTGCCTCCTTGGACCAAGGGGGAAACTGAGGCAGGCTCGGCTGGGATGAGATGCGCCCAG
GTCCCATGTGAGCTG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               28-123, - strand, RNAz p=0.875095
               

               
               79-182, - strand, RNAz p=0.860569

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               28-123, - strand, RNAz p=0.875095
               

               
               79-182, - strand, RNAz p=0.860569

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               1-255, gnl|bosTau2|chr29 (36346396-36346669)
               

               
               1-255, gnl|canFam2|chr18 (53190850-53190108)
               

               
               1-255, gnl|dasNov1|scaffold_103058 (6606-5866)
               

               
               1-255, gnl|hg17|chr11 (66793564-66794336)
               

               
               1-255, gnl|Hg17|chr11 (66794312-66794081)
               

               
               1-255, gnl|loxAfr1|scaffold_208969 (534-1254)
               

               
               1-255, gnl|mm7|chr19 (4198204-4197391)
               

               
               1-255, gnl|Mm7|chr19 (4197413-4197650)
               

               
               1-255, gnl|panTro1|chr9 (68050762-68051534)
               

               
               1-255, gnl|rheMac2|chr14 (7194404-7193632)
               

               
               1-255, gnl|rn3|chr1 (207043699-207042957)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-255, gnl|bosTau2|chr29 (36346396-36346669)
               

               
               1-255, gnl|canFam2|chr18 (53190850-53190108)
               

               
               1-255, gnl|dasNov1|scaffold_103058 (6606-5866)
               

               
               1-255, gnl|hg17|chr11 (66793564-66794336)
               

               
               1-255, gnl|Hg17|chr11 (66794312-66794081)
               

               
               1-255, gnl|loxAfr1|scaffold_208969 (534-1254)
               

               
               1-255, gnl|mm7|chr19 (4198204-4197391)
               

               
               1-255, gnl|Mm7|chr19 (4197413-4197650)
               

               
               1-255, gnl|panTro1|chr9 (68050762-68051534)
               

               
               1-255, gnl|rheMac2|chr14 (7194404-7193632)
               

               
               1-255, gnl|rn3|chr1 (207043699-207042957)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	28-123, - strand, RNAz p=0.875095
	79-182, - strand, RNAz p=0.860569

	1-255, gnl\|bosTau2\|chr29 (36346396-36346669)
	1-255, gnl\|canFam2\|chr18 (53190850-53190108)
	1-255, gnl\|dasNov1\|scaffold_103058 (6606-5866)
	1-255, gnl\|hg17\|chr11 (66793564-66794336)
	1-255, gnl\|Hg17\|chr11 (66794312-66794081)
	1-255, gnl\|loxAfr1\|scaffold_208969 (534-1254)
	1-255, gnl\|mm7\|chr19 (4198204-4197391)
	1-255, gnl\|Mm7\|chr19 (4197413-4197650)
	1-255, gnl\|panTro1\|chr9 (68050762-68051534)
	1-255, gnl\|rheMac2\|chr14 (7194404-7193632)
	1-255, gnl\|rn3\|chr1 (207043699-207042957)