Non-Coding RNA Search

rpigca_2166.y1

Sequence:


               
               AACAGGTCTCTCTCTTTCTCTCTCTTTTTTTCGGCCCCATCTTCAGCGTCtggaagttac
cagactgggggttgaatccaagccatagctgcgagccacaccacagctgcgacaacacca
ggtccataactctccacaccaggccagagattgaacccaggccactgcagagacaacgcc
agatccttaacgtgctgtgccacagtgggaactccCAAGAGAATAGACATCTCTTGAGCC
TCCTTGAAGCCAGGGGGCCTCTGGGGCCACAGCAAGGGGAGCAGAGGGGATAGATGTGAA
ATGATCGCCTGCAGCCCTGGCACAAGGGGCCAGAGAAGGAGCCCAGGAAGGGGAGCCCTC
TCGTTGATGCGCGCCCTCCCCAGCCCATGAGGTTGGGCTGGTGTCTTTGCAGGTGGCAGG
GCGGGAGGGGCCCCTGTCTGCCTCTGTGCTCTTTGAGTATCGAGCCCGCCGATTCCTGTC
ACTGCCTAGCACTCAGCTTGACTGGTTGTCACTGGACGACAACCAGTTCCGGATGTCCAT
CCTGGAGCGACTGGAGCAGATGGAGAAGCGGATGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACAGGTCTCTCTCTTTCTCTCTCTTTTTTTCGGCCCCATCTTCAGCGTCtggaagttac
cagactgggggttgaatccaagccatagctgcgagccacaccacagctgcgacaacacca
ggtccataactctccacaccaggccagagattgaacccaggccactgcagagacaacgcc
agatccttaacgtgctgtgccacagtgggaactccCAAGAGAATAGACATCTCTTGAGCC
TCCTTGAAGCCAGGGGGCCTCTGGGGCCACAGCAAGGGGAGCAGAGGGGATAGATGTGAA
ATGATCGCCTGCAGCCCTGGCACAAGGGGCCAGAGAAGGAGCCCAGGAAGGGGAGCCCTC
TCGTTGATGCGCGCCCTCCCCAGCCCATGAGGTTGGGCTGGTGTCTTTGCAGGTGGCAGG
GCGGGAGGGGCCCCTGTCTGCCTCTGTGCTCTTTGAGTATCGAGCCCGCCGATTCCTGTC
ACTGCCTAGCACTCAGCTTGACTGGTTGTCACTGGACGACAACCAGTTCCGGATGTCCAT
CCTGGAGCGACTGGAGCAGATGGAGAAGCGGATGGC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               245-483, - strand, RNAz p=0.986989
               

               
               285-479, + strand, RNAz p=0.999517

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               245-483, - strand, RNAz p=0.986989
               

               
               285-479, + strand, RNAz p=0.999517

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               383-479, DA449563 CTONG2 Homo sapiens cDNA clone CTONG2021441 5', mRNA 
(dbj|DA449563.1|), blast E-value=5e-39, identity=96.91% 
               

               
               383-479, DA938008 SPLEN2 Homo sapiens cDNA clone SPLEN2011032 5', mRNA 
(dbj|DA938008.1|), blast E-value=5e-39, identity=96.91% 
               

               
               383-479, DA944354 SPLEN2 Homo sapiens cDNA clone SPLEN2019479 5', mRNA 
(dbj|DA944354.1|), blast E-value=5e-39, identity=96.91% 
               

               
               383-479, DB159796 THYMU3 Homo sapiens cDNA clone THYMU3039703 5', mRNA 
(dbj|DB159796.1|), blast E-value=5e-39, identity=96.91% 
               

               
               383-479, DB206877 TRACH2 Homo sapiens cDNA clone TRACH2019323 5', mRNA 
(dbj|DB206877.1|), blast E-value=5e-39, identity=96.91% 
               

               
               383-479, RC4-NN0237-291100-011-h12 NN0237 Homo sapiens cDNA, mRNA sequence 
(gb|BF958441.1|), blast E-value=1.99993e-41, identity=97.94%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               383-479, DA449563 CTONG2 Homo sapiens cDNA clone CTONG2021441 5', mRNA 
(dbj|DA449563.1|), blast E-value=5e-39, identity=96.91% 
               

               
               383-479, DA938008 SPLEN2 Homo sapiens cDNA clone SPLEN2011032 5', mRNA 
(dbj|DA938008.1|), blast E-value=5e-39, identity=96.91% 
               

               
               383-479, DA944354 SPLEN2 Homo sapiens cDNA clone SPLEN2019479 5', mRNA 
(dbj|DA944354.1|), blast E-value=5e-39, identity=96.91% 
               

               
               383-479, DB159796 THYMU3 Homo sapiens cDNA clone THYMU3039703 5', mRNA 
(dbj|DB159796.1|), blast E-value=5e-39, identity=96.91% 
               

               
               383-479, DB206877 TRACH2 Homo sapiens cDNA clone TRACH2019323 5', mRNA 
(dbj|DB206877.1|), blast E-value=5e-39, identity=96.91% 
               

               
               383-479, RC4-NN0237-291100-011-h12 NN0237 Homo sapiens cDNA, mRNA sequence 
(gb|BF958441.1|), blast E-value=1.99993e-41, identity=97.94%

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               245-518, gnl|bosTau2|chr19 (14859621-14859362)
               

               
               245-518, gnl|canFam2|chr5 (34648076-34647905)
               

               
               245-518, gnl|danRer3|chr1 (44776588-44776746)
               

               
               245-518, gnl|echTel1|scaffold_308456 (72198-72013)
               

               
               245-518, gnl|fr1|chrUn (41496592-41496415)
               

               
               245-518, gnl|hg17|chr17 (4821055-4821241)
               

               
               245-518, gnl|Hg17|chr17 (4821346-4821077)
               

               
               245-518, gnl|loxAfr1|scaffold_49026 (10888-10703)
               

               
               245-518, gnl|mm7|chr11 (70759836-70760018)
               

               
               245-518, gnl|Mm7|chr11 (70760124-70759858)
               

               
               245-518, gnl|monDom2|scaffold_66 (3414702-3414522)
               

               
               245-518, gnl|oryCun1|scaffold_200832 (100187-100002)
               

               
               245-518, gnl|panTro1|chr19 (5149326-5149512)
               

               
               245-518, gnl|rheMac2|chr16 (4778910-4779096)
               

               
               245-518, gnl|rn3|chr10 (57571928-57572105)
               

               
               245-518, gnl|tetNig1|chrUn_random (83966302-83966451)
               

               
               245-518, gnl|xenTro1|scaffold_1396 (122097-121930)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               245-518, gnl|bosTau2|chr19 (14859621-14859362)
               

               
               245-518, gnl|canFam2|chr5 (34648076-34647905)
               

               
               245-518, gnl|danRer3|chr1 (44776588-44776746)
               

               
               245-518, gnl|echTel1|scaffold_308456 (72198-72013)
               

               
               245-518, gnl|fr1|chrUn (41496592-41496415)
               

               
               245-518, gnl|hg17|chr17 (4821055-4821241)
               

               
               245-518, gnl|Hg17|chr17 (4821346-4821077)
               

               
               245-518, gnl|loxAfr1|scaffold_49026 (10888-10703)
               

               
               245-518, gnl|mm7|chr11 (70759836-70760018)
               

               
               245-518, gnl|Mm7|chr11 (70760124-70759858)
               

               
               245-518, gnl|monDom2|scaffold_66 (3414702-3414522)
               

               
               245-518, gnl|oryCun1|scaffold_200832 (100187-100002)
               

               
               245-518, gnl|panTro1|chr19 (5149326-5149512)
               

               
               245-518, gnl|rheMac2|chr16 (4778910-4779096)
               

               
               245-518, gnl|rn3|chr10 (57571928-57572105)
               

               
               245-518, gnl|tetNig1|chrUn_random (83966302-83966451)
               

               
               245-518, gnl|xenTro1|scaffold_1396 (122097-121930)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	245-483, - strand, RNAz p=0.986989
	285-479, + strand, RNAz p=0.999517

	383-479, DA449563 CTONG2 Homo sapiens cDNA clone CTONG2021441 5', mRNA (dbj\|DA449563.1\|), blast E-value=5e-39, identity=96.91%
	383-479, DA938008 SPLEN2 Homo sapiens cDNA clone SPLEN2011032 5', mRNA (dbj\|DA938008.1\|), blast E-value=5e-39, identity=96.91%
	383-479, DA944354 SPLEN2 Homo sapiens cDNA clone SPLEN2019479 5', mRNA (dbj\|DA944354.1\|), blast E-value=5e-39, identity=96.91%
	383-479, DB159796 THYMU3 Homo sapiens cDNA clone THYMU3039703 5', mRNA (dbj\|DB159796.1\|), blast E-value=5e-39, identity=96.91%
	383-479, DB206877 TRACH2 Homo sapiens cDNA clone TRACH2019323 5', mRNA (dbj\|DB206877.1\|), blast E-value=5e-39, identity=96.91%
	383-479, RC4-NN0237-291100-011-h12 NN0237 Homo sapiens cDNA, mRNA sequence (gb\|BF958441.1\|), blast E-value=1.99993e-41, identity=97.94%

	245-518, gnl\|bosTau2\|chr19 (14859621-14859362)
	245-518, gnl\|canFam2\|chr5 (34648076-34647905)
	245-518, gnl\|danRer3\|chr1 (44776588-44776746)
	245-518, gnl\|echTel1\|scaffold_308456 (72198-72013)
	245-518, gnl\|fr1\|chrUn (41496592-41496415)
	245-518, gnl\|hg17\|chr17 (4821055-4821241)
	245-518, gnl\|Hg17\|chr17 (4821346-4821077)
	245-518, gnl\|loxAfr1\|scaffold_49026 (10888-10703)
	245-518, gnl\|mm7\|chr11 (70759836-70760018)
	245-518, gnl\|Mm7\|chr11 (70760124-70759858)
	245-518, gnl\|monDom2\|scaffold_66 (3414702-3414522)
	245-518, gnl\|oryCun1\|scaffold_200832 (100187-100002)
	245-518, gnl\|panTro1\|chr19 (5149326-5149512)
	245-518, gnl\|rheMac2\|chr16 (4778910-4779096)
	245-518, gnl\|rn3\|chr10 (57571928-57572105)
	245-518, gnl\|tetNig1\|chrUn_random (83966302-83966451)
	245-518, gnl\|xenTro1\|scaffold_1396 (122097-121930)