rpigca_2186.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTGTAAATGTCACGCCTACTCATGCCTTTACTGTTATTTGTCTTAGACGAAATGTTTCA TCTGTGGGATTGGCAATGACTACTTTGACACGACCCCTCATGGTTTTGAAACACACACCT TACAAGAACACAACTTAGCCAACTACTTGTTCTTCCTGATGTATTTGATTAATAAAGATG AAACAGAGCACACAGGCCAGGAATCTTATGTCTGGAAGATGTACCAGGAAAGGTGTTGGG ATTTCTTCCCAGCTGGTGACTGCTTCCGGAAACAGTACGAAGATCAGCTTGGATAAATGA TGTGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTGTAAATGTCACGCCTACTCATGCCTTTACTGTTATTTGTCTTAGACGAAATGTTTCA TCTGTGGGATTGGCAATGACTACTTTGACACGACCCCTCATGGTTTTGAAACACACACCT TACAAGAACACAACTTAGCCAACTACTTGTTCTTCCTGATGTATTTGATTAATAAAGATG AAACAGAGCACACAGGCCAGGAATCTTATGTCTGGAAGATGTACCAGGAAAGGTGTTGGG ATTTCTTCCCAGCTGGTGACTGCTTCCGGAAACAGTACGAAGATCAGCTTGGATAAATGA TGTGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 198-299, + strand, RNAz p=0.707791 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 198-299, + strand, RNAz p=0.707791 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_001036, + |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-150, gnl|bosTau2|chr10 (17687051-17686903) | |
| 1-150, gnl|Hg17|chr15 (31940524-31940673) | |
| 1-150, gnl|Mm7|chr2 (112485677-112485545) | |
| 198-299, gnl|bosTau2|chr10 (17683760-17683659) | |
| 198-299, gnl|canFam2|chr30 (4170586-4170468) | |
| 198-299, gnl|danRer3|chr20 (37110569-37110676) | |
| 198-299, gnl|dasNov1|scaffold_12199 (14799-14682) | |
| 198-299, gnl|echTel1|scaffold_320511 (92649-92767) | |
| 198-299, gnl|fr1|chrUn (81752616-81752734) | |
| 198-299, gnl|galGal2|chr5 (27053359-27053248) | |
| 198-299, gnl|hg17|chr15 (31944608-31944726) | |
| 198-299, gnl|Hg17|chr15 (31944621-31944722) | |
| 198-299, gnl|loxAfr1|scaffold_12675 (18412-18294) | |
| 198-299, gnl|mm7|chr2 (112482474-112482356) | |
| 198-299, gnl|Mm7|chr2 (112482459-112482358) | |
| 198-299, gnl|monDom2|scaffold_12 (11686849-11686968) | |
| 198-299, gnl|oryCun1|scaffold_110477 (6222-6104) | |
| 198-299, gnl|panTro1|chr16 (31581203-31581321) | |
| 198-299, gnl|rheMac2|chr7 (12096226-12096344) | |
| 198-299, gnl|rn3|chr3 (98373167-98373049) | |
| 198-299, gnl|tetNig1|chr10 (4174916-4175034) | |
| 198-299, gnl|xenTro1|scaffold_572 (671249-671364) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-150, gnl|bosTau2|chr10 (17687051-17686903) | |
| 1-150, gnl|Hg17|chr15 (31940524-31940673) | |
| 1-150, gnl|Mm7|chr2 (112485677-112485545) | |
| 198-299, gnl|bosTau2|chr10 (17683760-17683659) | |
| 198-299, gnl|canFam2|chr30 (4170586-4170468) | |
| 198-299, gnl|danRer3|chr20 (37110569-37110676) | |
| 198-299, gnl|dasNov1|scaffold_12199 (14799-14682) | |
| 198-299, gnl|echTel1|scaffold_320511 (92649-92767) | |
| 198-299, gnl|fr1|chrUn (81752616-81752734) | |
| 198-299, gnl|galGal2|chr5 (27053359-27053248) | |
| 198-299, gnl|hg17|chr15 (31944608-31944726) | |
| 198-299, gnl|Hg17|chr15 (31944621-31944722) | |
| 198-299, gnl|loxAfr1|scaffold_12675 (18412-18294) | |
| 198-299, gnl|mm7|chr2 (112482474-112482356) | |
| 198-299, gnl|Mm7|chr2 (112482459-112482358) | |
| 198-299, gnl|monDom2|scaffold_12 (11686849-11686968) | |
| 198-299, gnl|oryCun1|scaffold_110477 (6222-6104) | |
| 198-299, gnl|panTro1|chr16 (31581203-31581321) | |
| 198-299, gnl|rheMac2|chr7 (12096226-12096344) | |
| 198-299, gnl|rn3|chr3 (98373167-98373049) | |
| 198-299, gnl|tetNig1|chr10 (4174916-4175034) | |
| 198-299, gnl|xenTro1|scaffold_572 (671249-671364) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.119646) |