Non-Coding RNA Search

rpigcb_0114.y1

Sequence:


               
               CCGGAGCCCAGAGGCTCAAAATAGCCCCGGGCTGCTCGCAGAACGAGCTCTCCTGCCCAT
CGGTACTTACCAGTTCAGCCGGCGCTACTTGGCGTTGTCTCTTTTAAGCCTCACAAGAGG
TAGACAGCGCGAGGGAGGTCGCTGCCCTCGCCTGTCAGATGCGTAAACCGAGGCTCAGCG
AAGTGTTAGATGCCTTGCCCGGGACCGCAGGTCGGAGGGGACTGCGATTCCGGTCTTCGG
ACGCTTGGCCGCCTGCACACCCGCCCGCCCAGCTGTTCGCTGGCCCAGCCTAGGCTCTCT
GGGCAGATGTCTGGGAGCTGGGGGGAGACGGCCTGTGCCCCTGTGTTAAGTAACCAGCAG
GTCGGGGGTGGGCATGGGGGCTGGGACGCACACTAGGCCCCACAGCGGGGGACGTGACCA
CAACACACACTCCACACCCACCAAGTATTATTCTAAGTGGTGCCTGTTTCCTCGAAGTCT
CCTGGAGGATTGGAGAAAGCTTGCCGCTTGTTGATTATAGAGTTGTCACATACTCTGATT
TCCTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGAGCCCAGAGGCTCAAAATAGCCCCGGGCTGCTCGCAGAACGAGCTCTCCTGCCCAT
CGGTACTTACCAGTTCAGCCGGCGCTACTTGGCGTTGTCTCTTTTAAGCCTCACAAGAGG
TAGACAGCGCGAGGGAGGTCGCTGCCCTCGCCTGTCAGATGCGTAAACCGAGGCTCAGCG
AAGTGTTAGATGCCTTGCCCGGGACCGCAGGTCGGAGGGGACTGCGATTCCGGTCTTCGG
ACGCTTGGCCGCCTGCACACCCGCCCGCCCAGCTGTTCGCTGGCCCAGCCTAGGCTCTCT
GGGCAGATGTCTGGGAGCTGGGGGGAGACGGCCTGTGCCCCTGTGTTAAGTAACCAGCAG
GTCGGGGGTGGGCATGGGGGCTGGGACGCACACTAGGCCCCACAGCGGGGGACGTGACCA
CAACACACACTCCACACCCACCAAGTATTATTCTAAGTGGTGCCTGTTTCCTCGAAGTCT
CCTGGAGGATTGGAGAAAGCTTGCCGCTTGTTGATTATAGAGTTGTCACATACTCTGATT
TCCTAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-118, - strand, RNAz p=0.883113

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, - strand, RNAz p=0.883113

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               80-146, + strand, RNAmicro p=0.992084

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               80-146, + strand, RNAmicro p=0.992084

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-531, gnl|bosTau2|chr11 (55411724-55412268)
               

               
               1-531, gnl|Hg17|chr2 (27167750-27168220)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-531, gnl|bosTau2|chr11 (55411724-55412268)
               

               
               1-531, gnl|Hg17|chr2 (27167750-27168220)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	1-531, gnl\|bosTau2\|chr11 (55411724-55412268)
	1-531, gnl\|Hg17\|chr2 (27167750-27168220)