Non-Coding RNA Search

rpigcb_10206.y1

Sequence:


               
               GCCTCTAAGGGACCCAAATCCTTCAGACCTTTTGGAGAACCTGGATGACAGTGTGTTTTC
GAAGCGGGATGCGAAACTGGAGCTGGATGAGAAGAGAAGGAAAAGATGGGATATTCAGAG
GATCAGGGAACAAAGAATTTTACAGCGACTGCAGCTCAGAATGTATAAAAAGAAAGGAAT
TCAGGAATCTGAGCCTGAGGTTACCTCATTTTTCCCTGAGCCAGATGATGTTGAAAGTTT
GATGATTACCCCCTTCTTGCCTGTTGTAGCATTTGGACGACCATTACCAAAACTAACTCC
ACAGAATTTTGAGCTGCCCTGGTTGGATGAGCGTAGCCGATGCAGGTTGGAGATCCAGAA
GAAGCAAACTCCTCATCGGACATGTAGGAAATAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTCTAAGGGACCCAAATCCTTCAGACCTTTTGGAGAACCTGGATGACAGTGTGTTTTC
GAAGCGGGATGCGAAACTGGAGCTGGATGAGAAGAGAAGGAAAAGATGGGATATTCAGAG
GATCAGGGAACAAAGAATTTTACAGCGACTGCAGCTCAGAATGTATAAAAAGAAAGGAAT
TCAGGAATCTGAGCCTGAGGTTACCTCATTTTTCCCTGAGCCAGATGATGTTGAAAGTTT
GATGATTACCCCCTTCTTGCCTGTTGTAGCATTTGGACGACCATTACCAAAACTAACTCC
ACAGAATTTTGAGCTGCCCTGGTTGGATGAGCGTAGCCGATGCAGGTTGGAGATCCAGAA
GAAGCAAACTCCTCATCGGACATGTAGGAAATAGCT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               104-222, - strand, RNAz p=0.966701
               

               
               150-246, - strand, RNAz p=0.878186

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               104-222, - strand, RNAz p=0.966701
               

               
               150-246, - strand, RNAz p=0.878186

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               104-246, gnl|bosTau2|chr19 (34473990-34473849)
               

               
               104-246, gnl|canFam2|chr9 (25761131-25760963)
               

               
               104-246, gnl|danRer3|chr3 (16404196-16404344)
               

               
               104-246, gnl|dasNov1|scaffold_5157 (43516-43685)
               

               
               104-246, gnl|echTel1|scaffold_310535 (28348-28518)
               

               
               104-246, gnl|fr1|chrUn (215583482-215583329)
               

               
               104-246, gnl|galGal2|chrUn (131917337-131917490)
               

               
               104-246, gnl|hg17|chr17 (35543298-35543466)
               

               
               104-246, gnl|Hg17|chr17 (35543311-35543452)
               

               
               104-246, gnl|loxAfr1|scaffold_39971 (2279-2106)
               

               
               104-246, gnl|mm7|chr11 (98913326-98913494)
               

               
               104-246, gnl|Mm7|chr11 (98913339-98913480)
               

               
               104-246, gnl|monDom2|scaffold_18 (49354695-49354864)
               

               
               104-246, gnl|oryCun1|scaffold_178578 (6902-7070)
               

               
               104-246, gnl|panTro1|chr19 (38782774-38782942)
               

               
               104-246, gnl|rheMac2|chr16 (50242477-50242645)
               

               
               104-246, gnl|rn3|chr10 (87591007-87591175)
               

               
               104-246, gnl|tetNig1|chr2 (1456313-1456466)
               

               
               104-246, gnl|xenTro1|scaffold_670 (387308-387165)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               104-246, gnl|bosTau2|chr19 (34473990-34473849)
               

               
               104-246, gnl|canFam2|chr9 (25761131-25760963)
               

               
               104-246, gnl|danRer3|chr3 (16404196-16404344)
               

               
               104-246, gnl|dasNov1|scaffold_5157 (43516-43685)
               

               
               104-246, gnl|echTel1|scaffold_310535 (28348-28518)
               

               
               104-246, gnl|fr1|chrUn (215583482-215583329)
               

               
               104-246, gnl|galGal2|chrUn (131917337-131917490)
               

               
               104-246, gnl|hg17|chr17 (35543298-35543466)
               

               
               104-246, gnl|Hg17|chr17 (35543311-35543452)
               

               
               104-246, gnl|loxAfr1|scaffold_39971 (2279-2106)
               

               
               104-246, gnl|mm7|chr11 (98913326-98913494)
               

               
               104-246, gnl|Mm7|chr11 (98913339-98913480)
               

               
               104-246, gnl|monDom2|scaffold_18 (49354695-49354864)
               

               
               104-246, gnl|oryCun1|scaffold_178578 (6902-7070)
               

               
               104-246, gnl|panTro1|chr19 (38782774-38782942)
               

               
               104-246, gnl|rheMac2|chr16 (50242477-50242645)
               

               
               104-246, gnl|rn3|chr10 (87591007-87591175)
               

               
               104-246, gnl|tetNig1|chr2 (1456313-1456466)
               

               
               104-246, gnl|xenTro1|scaffold_670 (387308-387165)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	104-222, - strand, RNAz p=0.966701
	150-246, - strand, RNAz p=0.878186

	104-246, gnl\|bosTau2\|chr19 (34473990-34473849)
	104-246, gnl\|canFam2\|chr9 (25761131-25760963)
	104-246, gnl\|danRer3\|chr3 (16404196-16404344)
	104-246, gnl\|dasNov1\|scaffold_5157 (43516-43685)
	104-246, gnl\|echTel1\|scaffold_310535 (28348-28518)
	104-246, gnl\|fr1\|chrUn (215583482-215583329)
	104-246, gnl\|galGal2\|chrUn (131917337-131917490)
	104-246, gnl\|hg17\|chr17 (35543298-35543466)
	104-246, gnl\|Hg17\|chr17 (35543311-35543452)
	104-246, gnl\|loxAfr1\|scaffold_39971 (2279-2106)
	104-246, gnl\|mm7\|chr11 (98913326-98913494)
	104-246, gnl\|Mm7\|chr11 (98913339-98913480)
	104-246, gnl\|monDom2\|scaffold_18 (49354695-49354864)
	104-246, gnl\|oryCun1\|scaffold_178578 (6902-7070)
	104-246, gnl\|panTro1\|chr19 (38782774-38782942)
	104-246, gnl\|rheMac2\|chr16 (50242477-50242645)
	104-246, gnl\|rn3\|chr10 (87591007-87591175)
	104-246, gnl\|tetNig1\|chr2 (1456313-1456466)
	104-246, gnl\|xenTro1\|scaffold_670 (387308-387165)