Non-Coding RNA Search

rpigcb_1030.y1

Sequence:


               
               CACAGTTCCCCCTCAAATGTACATACTTGCATACATGTCCAGAAGCATATATACCAGAAT
CTCTACCCAATAGCCTTATATTTGGAATTCCAGTCCTAGGTAAAATTTATATGATAGGAT
CTGGATTTATTACTCATGACCTTTGCACAGAATCATTGATCTTGTACACAGGGAGTTGGC
CATCTTTCTATTTCTGTTAATCTAAGTTATCACTTTTGATTCCCAGTGGTGTTTATCTTC
TCGGTTTAAATTGTTTACTTTTGCCAATGACTAAAAGCTACTTTCTCTAAAATGTTTACT
TGTCTCCCTTCTTTCTTTGTGTATTTATGCAGAAGTTACCTTCTAGGTGGAGCCTTCCTT
GGCTCCCCTCCCTTTGCTGTTTTGTGTGGTGCTCATTCCTGCTTAATACTAACATACCAT
TTTATTTATCTTATTTATTATCTGTCTGTCCATCTGTGTTAGTTCAGTGACGATGTGTTT
AGTCTATTTTTCTCACCACTGTATTTCTAGCATCTTAGTAGGCACTCAGTAAATGTTGGA
AGCTGCACATTTCAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACAGTTCCCCCTCAAATGTACATACTTGCATACATGTCCAGAAGCATATATACCAGAAT
CTCTACCCAATAGCCTTATATTTGGAATTCCAGTCCTAGGTAAAATTTATATGATAGGAT
CTGGATTTATTACTCATGACCTTTGCACAGAATCATTGATCTTGTACACAGGGAGTTGGC
CATCTTTCTATTTCTGTTAATCTAAGTTATCACTTTTGATTCCCAGTGGTGTTTATCTTC
TCGGTTTAAATTGTTTACTTTTGCCAATGACTAAAAGCTACTTTCTCTAAAATGTTTACT
TGTCTCCCTTCTTTCTTTGTGTATTTATGCAGAAGTTACCTTCTAGGTGGAGCCTTCCTT
GGCTCCCCTCCCTTTGCTGTTTTGTGTGGTGCTCATTCCTGCTTAATACTAACATACCAT
TTTATTTATCTTATTTATTATCTGTCTGTCCATCTGTGTTAGTTCAGTGACGATGTGTTT
AGTCTATTTTTCTCACCACTGTATTTCTAGCATCTTAGTAGGCACTCAGTAAATGTTGGA
AGCTGCACATTTCAGGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               328-441, - strand, RNAz p=0.87239

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               328-441, - strand, RNAz p=0.87239

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               17-535, gnl|bosTau2|chr1 (79594827-79594318)
               

               
               17-535, gnl|Hg17|chr3 (142704825-142705346)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-535, gnl|bosTau2|chr1 (79594827-79594318)
               

               
               17-535, gnl|Hg17|chr3 (142704825-142705346)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	17-535, gnl\|bosTau2\|chr1 (79594827-79594318)
	17-535, gnl\|Hg17\|chr3 (142704825-142705346)