Non-Coding RNA Search

rpigcb_1045.y1

Sequence:


               
               TGCCTCCTTCTCCGATGCCACCTCCAGAACAAGTGGGTCTTGGAATAGTGCCCCTGACTC
TTAGCGAGCCCACCCAGAAGAAAGGATTGAAGGTAGAGCCTGAGGAGTCCTCAGAGCCAC
TGAGTCACCAGAAAGCAAAAGAGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCTCCTTCTCCGATGCCACCTCCAGAACAAGTGGGTCTTGGAATAGTGCCCCTGACTC
TTAGCGAGCCCACCCAGAAGAAAGGATTGAAGGTAGAGCCTGAGGAGTCCTCAGAGCCAC
TGAGTCACCAGAAAGCAAAAGAGCCC

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-146, gnl|bosTau2|chr10 (13829189-13829325)
               

               
               1-146, gnl|canFam2|chr8 (6550493-6550915)
               

               
               1-146, gnl|dasNov1|scaffold_8070 (17387-17824)
               

               
               1-146, gnl|echTel1|scaffold_295912 (11830-11438)
               

               
               1-146, gnl|hg17|chr14 (22815415-22815852)
               

               
               1-146, gnl|Hg17|chr14 (22815822-22815665)
               

               
               1-146, gnl|mm7|chr14 (49724415-49724831)
               

               
               1-146, gnl|Mm7|chr14 (49724801-49724647)
               

               
               1-146, gnl|monDom2|scaffold_12 (26432399-26431977)
               

               
               1-146, gnl|oryCun1|scaffold_140108 (116-553)
               

               
               1-146, gnl|panTro1|chr15 (21787747-21788184)
               

               
               1-146, gnl|rheMac2|chr7 (86114942-86115379)
               

               
               1-146, gnl|rn3|chr15 (32966237-32966653)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-146, gnl|bosTau2|chr10 (13829189-13829325)
               

               
               1-146, gnl|canFam2|chr8 (6550493-6550915)
               

               
               1-146, gnl|dasNov1|scaffold_8070 (17387-17824)
               

               
               1-146, gnl|echTel1|scaffold_295912 (11830-11438)
               

               
               1-146, gnl|hg17|chr14 (22815415-22815852)
               

               
               1-146, gnl|Hg17|chr14 (22815822-22815665)
               

               
               1-146, gnl|mm7|chr14 (49724415-49724831)
               

               
               1-146, gnl|Mm7|chr14 (49724801-49724647)
               

               
               1-146, gnl|monDom2|scaffold_12 (26432399-26431977)
               

               
               1-146, gnl|oryCun1|scaffold_140108 (116-553)
               

               
               1-146, gnl|panTro1|chr15 (21787747-21788184)
               

               
               1-146, gnl|rheMac2|chr7 (86114942-86115379)
               

               
               1-146, gnl|rn3|chr15 (32966237-32966653)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	1-146, gnl\|bosTau2\|chr10 (13829189-13829325)
	1-146, gnl\|canFam2\|chr8 (6550493-6550915)
	1-146, gnl\|dasNov1\|scaffold_8070 (17387-17824)
	1-146, gnl\|echTel1\|scaffold_295912 (11830-11438)
	1-146, gnl\|hg17\|chr14 (22815415-22815852)
	1-146, gnl\|Hg17\|chr14 (22815822-22815665)
	1-146, gnl\|mm7\|chr14 (49724415-49724831)
	1-146, gnl\|Mm7\|chr14 (49724801-49724647)
	1-146, gnl\|monDom2\|scaffold_12 (26432399-26431977)
	1-146, gnl\|oryCun1\|scaffold_140108 (116-553)
	1-146, gnl\|panTro1\|chr15 (21787747-21788184)
	1-146, gnl\|rheMac2\|chr7 (86114942-86115379)
	1-146, gnl\|rn3\|chr15 (32966237-32966653)