Non-Coding RNA Search

rpigcb_11704.y1

Sequence:


               
               CAGCACCCTGACGTGCAGATTCCAGAAGCCCCCGCCCTCCAACAAGTCACATCTCCGAGC
CAACCCTCAGTGTCTGGTTCCACGGGATGAGGCTGGCAAAGAGAGGCGAGGCAAGGCCCA
CCGAGCCCAAAGGCATCCAGCTCTTGCCTTTAAGGAGAAGAGCGGCCATGGAGGAGGTCT
GTCGGGTCCATCGGGAAGGCACTTCCTGGCATCTGCAGGTTCCCACCTTTCCAAAATGAC
AGCCAGCTCTTCCAGGTTCAAAATAGAAATAACTATATTTAACAAAAGGAGCGCCTGAGC
ATGTGTGCAGCAAATTATGTCGTTATGTAAAAATAGCCTAGTTTTCCTAGGTATTGGGGC
TGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCACCCTGACGTGCAGATTCCAGAAGCCCCCGCCCTCCAACAAGTCACATCTCCGAGC
CAACCCTCAGTGTCTGGTTCCACGGGATGAGGCTGGCAAAGAGAGGCGAGGCAAGGCCCA
CCGAGCCCAAAGGCATCCAGCTCTTGCCTTTAAGGAGAAGAGCGGCCATGGAGGAGGTCT
GTCGGGTCCATCGGGAAGGCACTTCCTGGCATCTGCAGGTTCCCACCTTTCCAAAATGAC
AGCCAGCTCTTCCAGGTTCAAAATAGAAATAACTATATTTAACAAAAGGAGCGCCTGAGC
ATGTGTGCAGCAAATTATGTCGTTATGTAAAAATAGCCTAGTTTTCCTAGGTATTGGGGC
TGCT

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               126-362, gnl|bosTau2|chr10 (46818664-46818433)
               

               
               126-362, gnl|canFam2|chr5 (8888969-8888628)
               

               
               126-362, gnl|dasNov1|scaffold_20295 (8158-8450)
               

               
               126-362, gnl|echTel1|scaffold_303945 (101078-100738)
               

               
               126-362, gnl|hg17|chr11 (128143902-128144244)
               

               
               126-362, gnl|Hg17|chr11 (128144010-128144242)
               

               
               126-362, gnl|mm7|chr9 (32366799-32366495)
               

               
               126-362, gnl|Mm7|chr9 (32366730-32366495)
               

               
               126-362, gnl|monDom2|scaffold_15 (16995016-16995345)
               

               
               126-362, gnl|oryCun1|scaffold_211359 (2294-2612)
               

               
               126-362, gnl|panTro1|chr9 (130273302-130273644)
               

               
               126-362, gnl|rheMac2|chr14 (126900119-126900459)
               

               
               126-362, gnl|rn3|chr8 (32243010-32242697)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               126-362, gnl|bosTau2|chr10 (46818664-46818433)
               

               
               126-362, gnl|canFam2|chr5 (8888969-8888628)
               

               
               126-362, gnl|dasNov1|scaffold_20295 (8158-8450)
               

               
               126-362, gnl|echTel1|scaffold_303945 (101078-100738)
               

               
               126-362, gnl|hg17|chr11 (128143902-128144244)
               

               
               126-362, gnl|Hg17|chr11 (128144010-128144242)
               

               
               126-362, gnl|mm7|chr9 (32366799-32366495)
               

               
               126-362, gnl|Mm7|chr9 (32366730-32366495)
               

               
               126-362, gnl|monDom2|scaffold_15 (16995016-16995345)
               

               
               126-362, gnl|oryCun1|scaffold_211359 (2294-2612)
               

               
               126-362, gnl|panTro1|chr9 (130273302-130273644)
               

               
               126-362, gnl|rheMac2|chr14 (126900119-126900459)
               

               
               126-362, gnl|rn3|chr8 (32243010-32242697)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	126-362, gnl\|bosTau2\|chr10 (46818664-46818433)
	126-362, gnl\|canFam2\|chr5 (8888969-8888628)
	126-362, gnl\|dasNov1\|scaffold_20295 (8158-8450)
	126-362, gnl\|echTel1\|scaffold_303945 (101078-100738)
	126-362, gnl\|hg17\|chr11 (128143902-128144244)
	126-362, gnl\|Hg17\|chr11 (128144010-128144242)
	126-362, gnl\|mm7\|chr9 (32366799-32366495)
	126-362, gnl\|Mm7\|chr9 (32366730-32366495)
	126-362, gnl\|monDom2\|scaffold_15 (16995016-16995345)
	126-362, gnl\|oryCun1\|scaffold_211359 (2294-2612)
	126-362, gnl\|panTro1\|chr9 (130273302-130273644)
	126-362, gnl\|rheMac2\|chr14 (126900119-126900459)
	126-362, gnl\|rn3\|chr8 (32243010-32242697)