Non-Coding RNA Search

rpigcb_11778.y1

Sequence:


               
               TGACATTGTCTGCACAGAGCAGTGTGTAATGAGTGGACACTTCGACAAGAAAATTCGTTT
CTGGGACATCCGATCAGAGAGCATCGTCCGAGAGATGGAGCTCTTGGGAAAGATTACTGC
CCTGGATTTAAACCCAGAAAGAACCGAACTCCTCAGCTGCTCTCGTGATGACCTGCTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGACATTGTCTGCACAGAGCAGTGTGTAATGAGTGGACACTTCGACAAGAAAATTCGTTT
CTGGGACATCCGATCAGAGAGCATCGTCCGAGAGATGGAGCTCTTGGGAAAGATTACTGC
CCTGGATTTAAACCCAGAAAGAACCGAACTCCTCAGCTGCTCTCGTGATGACCTGCTAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               72-177, - strand, RNAz p=0.567244

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               72-177, - strand, RNAz p=0.567244

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               72-177, gnl|bosTau2|chr3 (80652206-80652101)
               

               
               72-177, gnl|canFam2|chr25 (47799203-47799361)
               

               
               72-177, gnl|danRer3|chrUn (25053925-25053769)
               

               
               72-177, gnl|dasNov1|scaffold_25419 (10857-10699)
               

               
               72-177, gnl|echTel1|scaffold_209542 (908-753)
               

               
               72-177, gnl|galGal2|chr9 (626764-626925)
               

               
               72-177, gnl|hg17|chr2 (233982770-233982926)
               

               
               72-177, gnl|Hg17|chr2 (233982773-233982878)
               

               
               72-177, gnl|mm7|chr1 (87690415-87690571)
               

               
               72-177, gnl|Mm7|chr1 (87690418-87690523)
               

               
               72-177, gnl|monDom2|scaffold_174 (8452-8296)
               

               
               72-177, gnl|oryCun1|scaffold_212462 (41942-42098)
               

               
               72-177, gnl|panTro1|chr13 (124717140-124717296)
               

               
               72-177, gnl|rheMac2|chr12 (97179159-97179315)
               

               
               72-177, gnl|rn3|chr9 (86927606-86927762)
               

               
               72-177, gnl|tetNig1|chrUn_random (135586095-135586248)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               72-177, gnl|bosTau2|chr3 (80652206-80652101)
               

               
               72-177, gnl|canFam2|chr25 (47799203-47799361)
               

               
               72-177, gnl|danRer3|chrUn (25053925-25053769)
               

               
               72-177, gnl|dasNov1|scaffold_25419 (10857-10699)
               

               
               72-177, gnl|echTel1|scaffold_209542 (908-753)
               

               
               72-177, gnl|galGal2|chr9 (626764-626925)
               

               
               72-177, gnl|hg17|chr2 (233982770-233982926)
               

               
               72-177, gnl|Hg17|chr2 (233982773-233982878)
               

               
               72-177, gnl|mm7|chr1 (87690415-87690571)
               

               
               72-177, gnl|Mm7|chr1 (87690418-87690523)
               

               
               72-177, gnl|monDom2|scaffold_174 (8452-8296)
               

               
               72-177, gnl|oryCun1|scaffold_212462 (41942-42098)
               

               
               72-177, gnl|panTro1|chr13 (124717140-124717296)
               

               
               72-177, gnl|rheMac2|chr12 (97179159-97179315)
               

               
               72-177, gnl|rn3|chr9 (86927606-86927762)
               

               
               72-177, gnl|tetNig1|chrUn_random (135586095-135586248)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	72-177, gnl\|bosTau2\|chr3 (80652206-80652101)
	72-177, gnl\|canFam2\|chr25 (47799203-47799361)
	72-177, gnl\|danRer3\|chrUn (25053925-25053769)
	72-177, gnl\|dasNov1\|scaffold_25419 (10857-10699)
	72-177, gnl\|echTel1\|scaffold_209542 (908-753)
	72-177, gnl\|galGal2\|chr9 (626764-626925)
	72-177, gnl\|hg17\|chr2 (233982770-233982926)
	72-177, gnl\|Hg17\|chr2 (233982773-233982878)
	72-177, gnl\|mm7\|chr1 (87690415-87690571)
	72-177, gnl\|Mm7\|chr1 (87690418-87690523)
	72-177, gnl\|monDom2\|scaffold_174 (8452-8296)
	72-177, gnl\|oryCun1\|scaffold_212462 (41942-42098)
	72-177, gnl\|panTro1\|chr13 (124717140-124717296)
	72-177, gnl\|rheMac2\|chr12 (97179159-97179315)
	72-177, gnl\|rn3\|chr9 (86927606-86927762)
	72-177, gnl\|tetNig1\|chrUn_random (135586095-135586248)