Non-Coding RNA Search

rpigcb_11956.y1

Sequence:


               
               ATGCTGATGTGGTCAACAGTGGTTGGTTAGTGTGGGGAAGGATGACATCGACACTCCAAG
CCAGGCCTGGGCCCAGCCGGCCAGGCCCTTCACCCCTGGTCAATCAGTACAGCCTAACAG
TGGGGCTGGACCTTGGGCCACACGATACTAAGTCCCTGCTCAAGTGTGTGGAGTCACTGT
CGTTCATCGTGCGTGACGCTGCCCACATCACACCTGACAACTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGCTGATGTGGTCAACAGTGGTTGGTTAGTGTGGGGAAGGATGACATCGACACTCCAAG
CCAGGCCTGGGCCCAGCCGGCCAGGCCCTTCACCCCTGGTCAATCAGTACAGCCTAACAG
TGGGGCTGGACCTTGGGCCACACGATACTAAGTCCCTGCTCAAGTGTGTGGAGTCACTGT
CGTTCATCGTGCGTGACGCTGCCCACATCACACCTGACAACTTT

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

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               32-223, gnl|bosTau2|chr26 (14141014-14140821)
               

               
               32-223, gnl|canFam2|chr28 (17891868-17892139)
               

               
               32-223, gnl|danRer3|chr13 (4953219-4953491)
               

               
               32-223, gnl|dasNov1|scaffold_115872 (3295-3566)
               

               
               32-223, gnl|echTel1|scaffold_316526 (133735-134004)
               

               
               32-223, gnl|fr1|chrUn (313223552-313223822)
               

               
               32-223, gnl|galGal2|chr6 (16149008-16149279)
               

               
               32-223, gnl|hg17|chr10 (104126289-104126554)
               

               
               32-223, gnl|Hg17|chr10 (104126307-104126494)
               

               
               32-223, gnl|loxAfr1|scaffold_13013 (35322-35593)
               

               
               32-223, gnl|mm7|chr19 (46176790-46177064)
               

               
               32-223, gnl|Mm7|chr19 (46176811-46177004)
               

               
               32-223, gnl|monDom2|scaffold_14 (60961506-60961238)
               

               
               32-223, gnl|panTro1|chr8 (105885252-105885517)
               

               
               32-223, gnl|rheMac2|chr9 (102034527-102034792)
               

               
               32-223, gnl|rn3|chr1 (251758233-251758506)
               

               
               32-223, gnl|tetNig1|chrUn_random (102114910-102114639)
               

               
               32-223, gnl|xenTro1|scaffold_507 (706284-706016)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               32-223, gnl|bosTau2|chr26 (14141014-14140821)
               

               
               32-223, gnl|canFam2|chr28 (17891868-17892139)
               

               
               32-223, gnl|danRer3|chr13 (4953219-4953491)
               

               
               32-223, gnl|dasNov1|scaffold_115872 (3295-3566)
               

               
               32-223, gnl|echTel1|scaffold_316526 (133735-134004)
               

               
               32-223, gnl|fr1|chrUn (313223552-313223822)
               

               
               32-223, gnl|galGal2|chr6 (16149008-16149279)
               

               
               32-223, gnl|hg17|chr10 (104126289-104126554)
               

               
               32-223, gnl|Hg17|chr10 (104126307-104126494)
               

               
               32-223, gnl|loxAfr1|scaffold_13013 (35322-35593)
               

               
               32-223, gnl|mm7|chr19 (46176790-46177064)
               

               
               32-223, gnl|Mm7|chr19 (46176811-46177004)
               

               
               32-223, gnl|monDom2|scaffold_14 (60961506-60961238)
               

               
               32-223, gnl|panTro1|chr8 (105885252-105885517)
               

               
               32-223, gnl|rheMac2|chr9 (102034527-102034792)
               

               
               32-223, gnl|rn3|chr1 (251758233-251758506)
               

               
               32-223, gnl|tetNig1|chrUn_random (102114910-102114639)
               

               
               32-223, gnl|xenTro1|scaffold_507 (706284-706016)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cty (0.10408)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	32-223, gnl\|bosTau2\|chr26 (14141014-14140821)
	32-223, gnl\|canFam2\|chr28 (17891868-17892139)
	32-223, gnl\|danRer3\|chr13 (4953219-4953491)
	32-223, gnl\|dasNov1\|scaffold_115872 (3295-3566)
	32-223, gnl\|echTel1\|scaffold_316526 (133735-134004)
	32-223, gnl\|fr1\|chrUn (313223552-313223822)
	32-223, gnl\|galGal2\|chr6 (16149008-16149279)
	32-223, gnl\|hg17\|chr10 (104126289-104126554)
	32-223, gnl\|Hg17\|chr10 (104126307-104126494)
	32-223, gnl\|loxAfr1\|scaffold_13013 (35322-35593)
	32-223, gnl\|mm7\|chr19 (46176790-46177064)
	32-223, gnl\|Mm7\|chr19 (46176811-46177004)
	32-223, gnl\|monDom2\|scaffold_14 (60961506-60961238)
	32-223, gnl\|panTro1\|chr8 (105885252-105885517)
	32-223, gnl\|rheMac2\|chr9 (102034527-102034792)
	32-223, gnl\|rn3\|chr1 (251758233-251758506)
	32-223, gnl\|tetNig1\|chrUn_random (102114910-102114639)
	32-223, gnl\|xenTro1\|scaffold_507 (706284-706016)