Non-Coding RNA Search

rpigcb_12583.y1

Sequence:


               
               TCGCTGGGGACAGCAGCCGAACTTCGTTGGTCTCAACCATTGCAGGCATCTTGTCAACAG
TCACTACATCTTCCTCGGGCACCAACCCCAGCAGCAGTGCCAGCACCACAGCTATGCCCG
TGACCCAGTCGGTCAAGAAACCCAGTAAGCCTGTCAAGAAGAACCATGCTTGTGAGATGT
GTGGGAAGGCCTTCCGAGATGTGTACCACCTCAATCGGCACAAGCTCTCCCACTCGGACG
AAAAGCCCTTCGAGTGTCCTATTTGTAACCAGCGCTTCAAGAGGAAGGACCGGATGACTT
ACCATGTGAGGTCTCATGAAGGAGGCATCACCAAACCCTATACTTGCAGTGTTTGTGGGA
AAGGCTTCTCAAGGCCTGACCACTTAAGCTGTCACGTAAAACATGTCCATTCAACAGAAA
GACCCTTCAAATGCCAATTTTCCTCCCTCATGCAGACGTGCACTGCTGCCTTTGCCACCA
AAGACAGACTGCGGACACACATGGTGCGCCACGAAGGCAAGGTGTCCTGTAACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGCTGGGGACAGCAGCCGAACTTCGTTGGTCTCAACCATTGCAGGCATCTTGTCAACAG
TCACTACATCTTCCTCGGGCACCAACCCCAGCAGCAGTGCCAGCACCACAGCTATGCCCG
TGACCCAGTCGGTCAAGAAACCCAGTAAGCCTGTCAAGAAGAACCATGCTTGTGAGATGT
GTGGGAAGGCCTTCCGAGATGTGTACCACCTCAATCGGCACAAGCTCTCCCACTCGGACG
AAAAGCCCTTCGAGTGTCCTATTTGTAACCAGCGCTTCAAGAGGAAGGACCGGATGACTT
ACCATGTGAGGTCTCATGAAGGAGGCATCACCAAACCCTATACTTGCAGTGTTTGTGGGA
AAGGCTTCTCAAGGCCTGACCACTTAAGCTGTCACGTAAAACATGTCCATTCAACAGAAA
GACCCTTCAAATGCCAATTTTCCTCCCTCATGCAGACGTGCACTGCTGCCTTTGCCACCA
AAGACAGACTGCGGACACACATGGTGCGCCACGAAGGCAAGGTGTCCTGTAACAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               O97602_RABIT

Coded protein: 1 entry(ies)

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Protein identifier


               
               O97602_RABIT

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-374, gnl|bosTau2|chr19 (4211529-4211156)
               

               
               1-374, gnl|canFam2|chr9 (35994761-35994996)
               

               
               1-374, gnl|danRer3|chr15 (35825603-35825838)
               

               
               1-374, gnl|dasNov1|scaffold_101850 (6618-6845)
               

               
               1-374, gnl|echTel1|scaffold_317025 (82595-82801)
               

               
               1-374, gnl|fr1|chrUn (11227327-11227092)
               

               
               1-374, gnl|galGal2|chr19 (8266404-8266170)
               

               
               1-374, gnl|hg17|chr17 (53415057-53415292)
               

               
               1-374, gnl|Hg17|chr17 (53415431-53415058)
               

               
               1-374, gnl|loxAfr1|scaffold_22969 (648-420)
               

               
               1-374, gnl|mm7|chr11 (88143663-88143428)
               

               
               1-374, gnl|Mm7|chr11 (88143287-88143660)
               

               
               1-374, gnl|monDom2|scaffold_56 (5425145-5424910)
               

               
               1-374, gnl|oryCun1|scaffold_204609 (85044-85279)
               

               
               1-374, gnl|panTro1|chr19_random (39153674-39153909)
               

               
               1-374, gnl|rheMac2|chr16 (42210340-42210575)
               

               
               1-374, gnl|rn3|chr10 (76380884-76380649)
               

               
               1-374, gnl|tetNig1|chr7 (6038785-6039020)
               

               
               1-374, gnl|xenTro1|scaffold_580 (91740-91974)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-374, gnl|bosTau2|chr19 (4211529-4211156)
               

               
               1-374, gnl|canFam2|chr9 (35994761-35994996)
               

               
               1-374, gnl|danRer3|chr15 (35825603-35825838)
               

               
               1-374, gnl|dasNov1|scaffold_101850 (6618-6845)
               

               
               1-374, gnl|echTel1|scaffold_317025 (82595-82801)
               

               
               1-374, gnl|fr1|chrUn (11227327-11227092)
               

               
               1-374, gnl|galGal2|chr19 (8266404-8266170)
               

               
               1-374, gnl|hg17|chr17 (53415057-53415292)
               

               
               1-374, gnl|Hg17|chr17 (53415431-53415058)
               

               
               1-374, gnl|loxAfr1|scaffold_22969 (648-420)
               

               
               1-374, gnl|mm7|chr11 (88143663-88143428)
               

               
               1-374, gnl|Mm7|chr11 (88143287-88143660)
               

               
               1-374, gnl|monDom2|scaffold_56 (5425145-5424910)
               

               
               1-374, gnl|oryCun1|scaffold_204609 (85044-85279)
               

               
               1-374, gnl|panTro1|chr19_random (39153674-39153909)
               

               
               1-374, gnl|rheMac2|chr16 (42210340-42210575)
               

               
               1-374, gnl|rn3|chr10 (76380884-76380649)
               

               
               1-374, gnl|tetNig1|chr7 (6038785-6039020)
               

               
               1-374, gnl|xenTro1|scaffold_580 (91740-91974)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	1-374, gnl\|bosTau2\|chr19 (4211529-4211156)
	1-374, gnl\|canFam2\|chr9 (35994761-35994996)
	1-374, gnl\|danRer3\|chr15 (35825603-35825838)
	1-374, gnl\|dasNov1\|scaffold_101850 (6618-6845)
	1-374, gnl\|echTel1\|scaffold_317025 (82595-82801)
	1-374, gnl\|fr1\|chrUn (11227327-11227092)
	1-374, gnl\|galGal2\|chr19 (8266404-8266170)
	1-374, gnl\|hg17\|chr17 (53415057-53415292)
	1-374, gnl\|Hg17\|chr17 (53415431-53415058)
	1-374, gnl\|loxAfr1\|scaffold_22969 (648-420)
	1-374, gnl\|mm7\|chr11 (88143663-88143428)
	1-374, gnl\|Mm7\|chr11 (88143287-88143660)
	1-374, gnl\|monDom2\|scaffold_56 (5425145-5424910)
	1-374, gnl\|oryCun1\|scaffold_204609 (85044-85279)
	1-374, gnl\|panTro1\|chr19_random (39153674-39153909)
	1-374, gnl\|rheMac2\|chr16 (42210340-42210575)
	1-374, gnl\|rn3\|chr10 (76380884-76380649)
	1-374, gnl\|tetNig1\|chr7 (6038785-6039020)
	1-374, gnl\|xenTro1\|scaffold_580 (91740-91974)