Non-Coding RNA Search

rpigcb_12703.y1

Sequence:


               
               ATAAGCACTTAAAGCTTTGGTTTTTTTTAACTCGAAAGTCAAGGGGAAAGGGTAGTACCA
TTTAACTTTTACACTTTAATGACAAGCCAGATTCCTCTTAAACTGAGATTTGCGAAGTAT
GGAATGCATTTAGGTCCATCTGGAGCTACAGTTGATGAATTGCTTTTTTGACTTAGACTC
TGAAGAAAGGAGGAATGGCTAGCATCTCTTGGCTGGGAGCTGGAAGATTCTGGTAATTTA
TGCTTTTTTTGTCTTTTTGTCTCTCTCTTCTTTTGAAACAATGCAACCTGTTTTATGTGT
GAAAATCTTAAAGACAGCCTCATGGTTCCTGGTAGTATAATACAAGTCAGCCCTCTGCTA
CCACCTTCTGTAAAAACAGAAGGGGAAAGAAATGATTATTAAGCTTGATAAACTTTGAAT
TAAAATTATCATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAAGCACTTAAAGCTTTGGTTTTTTTTAACTCGAAAGTCAAGGGGAAAGGGTAGTACCA
TTTAACTTTTACACTTTAATGACAAGCCAGATTCCTCTTAAACTGAGATTTGCGAAGTAT
GGAATGCATTTAGGTCCATCTGGAGCTACAGTTGATGAATTGCTTTTTTGACTTAGACTC
TGAAGAAAGGAGGAATGGCTAGCATCTCTTGGCTGGGAGCTGGAAGATTCTGGTAATTTA
TGCTTTTTTTGTCTTTTTGTCTCTCTCTTCTTTTGAAACAATGCAACCTGTTTTATGTGT
GAAAATCTTAAAGACAGCCTCATGGTTCCTGGTAGTATAATACAAGTCAGCCCTCTGCTA
CCACCTTCTGTAAAAACAGAAGGGGAAAGAAATGATTATTAAGCTTGATAAACTTTGAAT
TAAAATTATCATAA

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               2-429, gnl|bosTau2|chr10 (61828390-61828830)
               

               
               2-429, gnl|canFam2|chr8 (52982272-52982683)
               

               
               2-429, gnl|dasNov1|scaffold_5047 (7209-7598)
               

               
               2-429, gnl|echTel1|scaffold_257802 (10375-10734)
               

               
               2-429, gnl|hg17|chr14 (76650858-76651267)
               

               
               2-429, gnl|Hg17|chr14 (76650966-76651408)
               

               
               2-429, gnl|loxAfr1|scaffold_15326 (11206-11587)
               

               
               2-429, gnl|mm7|chr12 (84965679-84966043)
               

               
               2-429, gnl|Mm7|chr12 (84965781-84966382)
               

               
               2-429, gnl|monDom2|scaffold_8 (56471426-56470998)
               

               
               2-429, gnl|oryCun1|scaffold_99502 (6292-5928)
               

               
               2-429, gnl|panTro1|chr15 (76706854-76707263)
               

               
               2-429, gnl|rheMac2|chr7 (140256247-140256657)
               

               
               2-429, gnl|rn3|chr6 (111099717-111100075)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-429, gnl|bosTau2|chr10 (61828390-61828830)
               

               
               2-429, gnl|canFam2|chr8 (52982272-52982683)
               

               
               2-429, gnl|dasNov1|scaffold_5047 (7209-7598)
               

               
               2-429, gnl|echTel1|scaffold_257802 (10375-10734)
               

               
               2-429, gnl|hg17|chr14 (76650858-76651267)
               

               
               2-429, gnl|Hg17|chr14 (76650966-76651408)
               

               
               2-429, gnl|loxAfr1|scaffold_15326 (11206-11587)
               

               
               2-429, gnl|mm7|chr12 (84965679-84966043)
               

               
               2-429, gnl|Mm7|chr12 (84965781-84966382)
               

               
               2-429, gnl|monDom2|scaffold_8 (56471426-56470998)
               

               
               2-429, gnl|oryCun1|scaffold_99502 (6292-5928)
               

               
               2-429, gnl|panTro1|chr15 (76706854-76707263)
               

               
               2-429, gnl|rheMac2|chr7 (140256247-140256657)
               

               
               2-429, gnl|rn3|chr6 (111099717-111100075)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cty (0.10408)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	2-429, gnl\|bosTau2\|chr10 (61828390-61828830)
	2-429, gnl\|canFam2\|chr8 (52982272-52982683)
	2-429, gnl\|dasNov1\|scaffold_5047 (7209-7598)
	2-429, gnl\|echTel1\|scaffold_257802 (10375-10734)
	2-429, gnl\|hg17\|chr14 (76650858-76651267)
	2-429, gnl\|Hg17\|chr14 (76650966-76651408)
	2-429, gnl\|loxAfr1\|scaffold_15326 (11206-11587)
	2-429, gnl\|mm7\|chr12 (84965679-84966043)
	2-429, gnl\|Mm7\|chr12 (84965781-84966382)
	2-429, gnl\|monDom2\|scaffold_8 (56471426-56470998)
	2-429, gnl\|oryCun1\|scaffold_99502 (6292-5928)
	2-429, gnl\|panTro1\|chr15 (76706854-76707263)
	2-429, gnl\|rheMac2\|chr7 (140256247-140256657)
	2-429, gnl\|rn3\|chr6 (111099717-111100075)