Non-Coding RNA Search

rpigcb_13028.y1

Sequence:


               
               AAGGAAGAGGTTCCACCAAAAGCCTGTATTTTTGTATTTGAGACTTACTTTTTCTTAGAG
AGGTACGGGGCAGACTATTTGCGGGTTCTGAGGATACCACCACATTGTCATTTGATGTTT
GGAAGTTTTTGTTTTCTTGTTAATTTCCTGGCTTAAGTGACTATAGAGGGCTCTTCATTC
TCTGTAGCAAAAGTCCGAAATGTTCTGAAGACTTAATGAAAGGGTGAAGATGACAGGGAA
ATAAAGACAGAGTAGTAGAGTCTGAACCAGCAGCTCTCAAGGCATGGTCCAGTGTCCCCA
GAATCCCCAAACCCTTCTAAGTATTTCAGGAGATCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGAAGAGGTTCCACCAAAAGCCTGTATTTTTGTATTTGAGACTTACTTTTTCTTAGAG
AGGTACGGGGCAGACTATTTGCGGGTTCTGAGGATACCACCACATTGTCATTTGATGTTT
GGAAGTTTTTGTTTTCTTGTTAATTTCCTGGCTTAAGTGACTATAGAGGGCTCTTCATTC
TCTGTAGCAAAAGTCCGAAATGTTCTGAAGACTTAATGAAAGGGTGAAGATGACAGGGAA
ATAAAGACAGAGTAGTAGAGTCTGAACCAGCAGCTCTCAAGGCATGGTCCAGTGTCCCCA
GAATCCCCAAACCCTTCTAAGTATTTCAGGAGATCAA

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-337, gnl|bosTau2|chr4 (24770849-24771198)
               

               
               1-337, gnl|canFam2|chr14 (59590564-59590808)
               

               
               1-337, gnl|dasNov1|scaffold_197415 (903-1120)
               

               
               1-337, gnl|echTel1|scaffold_308412 (63464-63698)
               

               
               1-337, gnl|hg17|chr7 (117075328-117075570)
               

               
               1-337, gnl|Hg17|chr7 (117075680-117075339)
               

               
               1-337, gnl|loxAfr1|scaffold_1434 (186782-187013)
               

               
               1-337, gnl|mm7|chr6 (18417617-18417846)
               

               
               1-337, gnl|Mm7|chr6 (18417956-18417623)
               

               
               1-337, gnl|oryCun1|scaffold_89536 (295-520)
               

               
               1-337, gnl|panTro1|chr6 (119358922-119359162)
               

               
               1-337, gnl|rheMac2|chr3 (155165567-155165946)
               

               
               1-337, gnl|rn3|chr4 (44467402-44467646)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-337, gnl|bosTau2|chr4 (24770849-24771198)
               

               
               1-337, gnl|canFam2|chr14 (59590564-59590808)
               

               
               1-337, gnl|dasNov1|scaffold_197415 (903-1120)
               

               
               1-337, gnl|echTel1|scaffold_308412 (63464-63698)
               

               
               1-337, gnl|hg17|chr7 (117075328-117075570)
               

               
               1-337, gnl|Hg17|chr7 (117075680-117075339)
               

               
               1-337, gnl|loxAfr1|scaffold_1434 (186782-187013)
               

               
               1-337, gnl|mm7|chr6 (18417617-18417846)
               

               
               1-337, gnl|Mm7|chr6 (18417956-18417623)
               

               
               1-337, gnl|oryCun1|scaffold_89536 (295-520)
               

               
               1-337, gnl|panTro1|chr6 (119358922-119359162)
               

               
               1-337, gnl|rheMac2|chr3 (155165567-155165946)
               

               
               1-337, gnl|rn3|chr4 (44467402-44467646)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	1-337, gnl\|bosTau2\|chr4 (24770849-24771198)
	1-337, gnl\|canFam2\|chr14 (59590564-59590808)
	1-337, gnl\|dasNov1\|scaffold_197415 (903-1120)
	1-337, gnl\|echTel1\|scaffold_308412 (63464-63698)
	1-337, gnl\|hg17\|chr7 (117075328-117075570)
	1-337, gnl\|Hg17\|chr7 (117075680-117075339)
	1-337, gnl\|loxAfr1\|scaffold_1434 (186782-187013)
	1-337, gnl\|mm7\|chr6 (18417617-18417846)
	1-337, gnl\|Mm7\|chr6 (18417956-18417623)
	1-337, gnl\|oryCun1\|scaffold_89536 (295-520)
	1-337, gnl\|panTro1\|chr6 (119358922-119359162)
	1-337, gnl\|rheMac2\|chr3 (155165567-155165946)
	1-337, gnl\|rn3\|chr4 (44467402-44467646)