Non-Coding RNA Search

rpigcb_13610.y1

Sequence:


               
               GGTGATAATTGATGACCAGTTACCCGTTGATCATAAGGGAGAGTTGCTGTGTTCTTACTC
TAACAACAAAAGCGAACTGTGGGTTTCTCTCATAGAAAAAGCATACATGAAAGTCATGGG
AGGATATGATTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGATAATTGATGACCAGTTACCCGTTGATCATAAGGGAGAGTTGCTGTGTTCTTACTC
TAACAACAAAAGCGAACTGTGGGTTTCTCTCATAGAAAAAGCATACATGAAAGTCATGGG
AGGATATGATTTCC

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

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               1-134, gnl|bosTau2|chr1 (98651679-98651812)
               

               
               1-134, gnl|canFam2|chr23 (30408340-30408243)
               

               
               1-134, gnl|danRer3|chrNA (14707479-14707382)
               

               
               1-134, gnl|dasNov1|scaffold_7748 (19748-19651)
               

               
               1-134, gnl|fr1|chrUn (191277385-191277288)
               

               
               1-134, gnl|galGal2|chr2 (40608664-40608567)
               

               
               1-134, gnl|hg17|chr3 (15249025-15249122)
               

               
               1-134, gnl|Hg17|chr3 (15249029-15249162)
               

               
               1-134, gnl|mm7|chr14 (28788248-28788345)
               

               
               1-134, gnl|Mm7|chr14 (28788252-28788385)
               

               
               1-134, gnl|monDom2|scaffold_7 (70884789-70884886)
               

               
               1-134, gnl|oryCun1|scaffold_150471 (9517-9614)
               

               
               1-134, gnl|panTro1|chr2 (15862683-15862780)
               

               
               1-134, gnl|rheMac2|chr2 (157567254-157567351)
               

               
               1-134, gnl|rn3|chr16 (6807141-6807238)
               

               
               1-134, gnl|tetNig1|chrUn_random (41367717-41367814)
               

               
               1-134, gnl|xenTro1|scaffold_1228 (70962-70865)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-134, gnl|bosTau2|chr1 (98651679-98651812)
               

               
               1-134, gnl|canFam2|chr23 (30408340-30408243)
               

               
               1-134, gnl|danRer3|chrNA (14707479-14707382)
               

               
               1-134, gnl|dasNov1|scaffold_7748 (19748-19651)
               

               
               1-134, gnl|fr1|chrUn (191277385-191277288)
               

               
               1-134, gnl|galGal2|chr2 (40608664-40608567)
               

               
               1-134, gnl|hg17|chr3 (15249025-15249122)
               

               
               1-134, gnl|Hg17|chr3 (15249029-15249162)
               

               
               1-134, gnl|mm7|chr14 (28788248-28788345)
               

               
               1-134, gnl|Mm7|chr14 (28788252-28788385)
               

               
               1-134, gnl|monDom2|scaffold_7 (70884789-70884886)
               

               
               1-134, gnl|oryCun1|scaffold_150471 (9517-9614)
               

               
               1-134, gnl|panTro1|chr2 (15862683-15862780)
               

               
               1-134, gnl|rheMac2|chr2 (157567254-157567351)
               

               
               1-134, gnl|rn3|chr16 (6807141-6807238)
               

               
               1-134, gnl|tetNig1|chrUn_random (41367717-41367814)
               

               
               1-134, gnl|xenTro1|scaffold_1228 (70962-70865)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	1-134, gnl\|bosTau2\|chr1 (98651679-98651812)
	1-134, gnl\|canFam2\|chr23 (30408340-30408243)
	1-134, gnl\|danRer3\|chrNA (14707479-14707382)
	1-134, gnl\|dasNov1\|scaffold_7748 (19748-19651)
	1-134, gnl\|fr1\|chrUn (191277385-191277288)
	1-134, gnl\|galGal2\|chr2 (40608664-40608567)
	1-134, gnl\|hg17\|chr3 (15249025-15249122)
	1-134, gnl\|Hg17\|chr3 (15249029-15249162)
	1-134, gnl\|mm7\|chr14 (28788248-28788345)
	1-134, gnl\|Mm7\|chr14 (28788252-28788385)
	1-134, gnl\|monDom2\|scaffold_7 (70884789-70884886)
	1-134, gnl\|oryCun1\|scaffold_150471 (9517-9614)
	1-134, gnl\|panTro1\|chr2 (15862683-15862780)
	1-134, gnl\|rheMac2\|chr2 (157567254-157567351)
	1-134, gnl\|rn3\|chr16 (6807141-6807238)
	1-134, gnl\|tetNig1\|chrUn_random (41367717-41367814)
	1-134, gnl\|xenTro1\|scaffold_1228 (70962-70865)