rpigcb_14047.y1
|
AGCAAGTTGGAGAGACTTTGCGGTCTCTTGTTTGGGGACTTAATTAATTATATTGGACAG
CTATGCTTTTAATGTTAATAATATTCATGTTATGAAGAGACTTAATTTAAATATGTTTTG
TTTTCTATTGAACAGCTGAGCCCCATATGGGGGTTGGAAGGCAGCAGAGAGGACCCTTTC
AAGGTGTTCGTGTGAAGAACTCAGTGAAGGAACTCCTGCTGCACATCCGAAGTCATAAAC
AAAAGACTTCCGGACAAACCATTGATGATTTTAAGGTGGCACCTGATTTTTTTGCTTTGG
GTTGGGGAACAGGGAGACTAGTTGTCAGGGTATTACTCTCTGCTAGCCTAAGTTCAGTAA
GTCTTTTGTAGACCACAAAGTCCAAAGGACAGAGAGCTTGTTTGTCCTGCTGTCTGCTGT
ATTCCTGCCACTTAGCCCAGGGCTAGGCATTGGCAAGTGTGCAAGAGAAATTTAATGAAT
AAGTAAACGAAGGCAAGCAAGGCACA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGCAAGTTGGAGAGACTTTGCGGTCTCTTGTTTGGGGACTTAATTAATTATATTGGACAG
CTATGCTTTTAATGTTAATAATATTCATGTTATGAAGAGACTTAATTTAAATATGTTTTG
TTTTCTATTGAACAGCTGAGCCCCATATGGGGGTTGGAAGGCAGCAGAGAGGACCCTTTC
AAGGTGTTCGTGTGAAGAACTCAGTGAAGGAACTCCTGCTGCACATCCGAAGTCATAAAC
AAAAGACTTCCGGACAAACCATTGATGATTTTAAGGTGGCACCTGATTTTTTTGCTTTGG
GTTGGGGAACAGGGAGACTAGTTGTCAGGGTATTACTCTCTGCTAGCCTAAGTTCAGTAA
GTCTTTTGTAGACCACAAAGTCCAAAGGACAGAGAGCTTGTTTGTCCTGCTGTCTGCTGT
ATTCCTGCCACTTAGCCCAGGGCTAGGCATTGGCAAGTGTGCAAGAGAAATTTAATGAAT
AAGTAAACGAAGGCAAGCAAGGCACA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
164-240, + strand, RNAmicro p=0.969093 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
164-240, + strand, RNAmicro p=0.969093 |
Human gene identifier and UTR site,
human gene reading direction
|
5-340, gnl|bosTau2|chr11 (21560680-21560342) |
|
5-340, gnl|Hg17|chr3 (103053488-103053868) |
|
5-340, gnl|Mm7|chr16 (55661028-55660658) |
| |
|
363-497, gnl|bosTau2|chr11 (21560346-21560215) |
|
363-497, gnl|canFam2|chr33 (11163089-11163262) |
|
363-497, gnl|echTel1|scaffold_311560 (2194-2371) |
|
363-497, gnl|hg17|chr3 (103053803-103053979) |
|
363-497, gnl|Hg17|chr3 (103053824-103053993) |
|
363-497, gnl|loxAfr1|scaffold_1129 (59158-59332) |
|
363-497, gnl|mm7|chr16 (55660723-55660554) |
|
363-497, gnl|Mm7|chr16 (55660662-55660538) |
|
363-497, gnl|oryCun1|scaffold_195785 (54658-54483) |
|
363-497, gnl|panTro1|chr2 (104539822-104539997) |
|
363-497, gnl|rheMac2|chr2 (22025715-22025887) |
|
363-497, gnl|rn3|chr11 (45854386-45854535) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
5-340, gnl|bosTau2|chr11 (21560680-21560342) |
|
5-340, gnl|Hg17|chr3 (103053488-103053868) |
|
5-340, gnl|Mm7|chr16 (55661028-55660658) |
| |
|
363-497, gnl|bosTau2|chr11 (21560346-21560215) |
|
363-497, gnl|canFam2|chr33 (11163089-11163262) |
|
363-497, gnl|echTel1|scaffold_311560 (2194-2371) |
|
363-497, gnl|hg17|chr3 (103053803-103053979) |
|
363-497, gnl|Hg17|chr3 (103053824-103053993) |
|
363-497, gnl|loxAfr1|scaffold_1129 (59158-59332) |
|
363-497, gnl|mm7|chr16 (55660723-55660554) |
|
363-497, gnl|Mm7|chr16 (55660662-55660538) |
|
363-497, gnl|oryCun1|scaffold_195785 (54658-54483) |
|
363-497, gnl|panTro1|chr2 (104539822-104539997) |
|
363-497, gnl|rheMac2|chr2 (22025715-22025887) |
|
363-497, gnl|rn3|chr11 (45854386-45854535) |
