Non-Coding RNA Search

rpigcb_14391.y1

Sequence:


               
               TAGAGGAGAAAGCATGAGAATTTTGCATGAAGCTTTACCTGATTTGAATGGAAGACTGGA
GACTGAGGAATTGCTTTACCCTCCACCCCTGTCTCTCCCCAGGCCTTAGGGGCCCCACTC
CTCCTCCTCTCAGCAGCTGGTTACAGTTTCAGTGCCTGTTCTGTGTGTGTGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGAGGAGAAAGCATGAGAATTTTGCATGAAGCTTTACCTGATTTGAATGGAAGACTGGA
GACTGAGGAATTGCTTTACCCTCCACCCCTGTCTCTCCCCAGGCCTTAGGGGCCCCACTC
CTCCTCCTCTCAGCAGCTGGTTACAGTTTCAGTGCCTGTTCTGTGTGTGTGTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               33-125, - strand, RNAz p=0.654658

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               33-125, - strand, RNAz p=0.654658

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               3-173, gnl|bosTau2|chr10 (26683587-26683759)
               

               
               3-173, gnl|canFam2|chr30 (10935525-10935788)
               

               
               3-173, gnl|dasNov1|scaffold_12152 (5591-5318)
               

               
               3-173, gnl|echTel1|scaffold_315379 (42872-42610)
               

               
               3-173, gnl|hg17|chr15 (38888343-38888599)
               

               
               3-173, gnl|Hg17|chr15 (38888376-38888539)
               

               
               3-173, gnl|loxAfr1|scaffold_2794 (16393-16658)
               

               
               3-173, gnl|mm7|chr2 (118951066-118951321)
               

               
               3-173, gnl|Mm7|chr2 (118951097-118951260)
               

               
               3-173, gnl|monDom2|scaffold_12 (1394095-1393798)
               

               
               3-173, gnl|oryCun1|scaffold_211631 (50556-50805)
               

               
               3-173, gnl|panTro1|chr16 (38801843-38802097)
               

               
               3-173, gnl|rheMac2|chr7 (19189588-19189844)
               

               
               3-173, gnl|rn3|chr3 (105620051-105620312)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-173, gnl|bosTau2|chr10 (26683587-26683759)
               

               
               3-173, gnl|canFam2|chr30 (10935525-10935788)
               

               
               3-173, gnl|dasNov1|scaffold_12152 (5591-5318)
               

               
               3-173, gnl|echTel1|scaffold_315379 (42872-42610)
               

               
               3-173, gnl|hg17|chr15 (38888343-38888599)
               

               
               3-173, gnl|Hg17|chr15 (38888376-38888539)
               

               
               3-173, gnl|loxAfr1|scaffold_2794 (16393-16658)
               

               
               3-173, gnl|mm7|chr2 (118951066-118951321)
               

               
               3-173, gnl|Mm7|chr2 (118951097-118951260)
               

               
               3-173, gnl|monDom2|scaffold_12 (1394095-1393798)
               

               
               3-173, gnl|oryCun1|scaffold_211631 (50556-50805)
               

               
               3-173, gnl|panTro1|chr16 (38801843-38802097)
               

               
               3-173, gnl|rheMac2|chr7 (19189588-19189844)
               

               
               3-173, gnl|rn3|chr3 (105620051-105620312)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	3-173, gnl\|bosTau2\|chr10 (26683587-26683759)
	3-173, gnl\|canFam2\|chr30 (10935525-10935788)
	3-173, gnl\|dasNov1\|scaffold_12152 (5591-5318)
	3-173, gnl\|echTel1\|scaffold_315379 (42872-42610)
	3-173, gnl\|hg17\|chr15 (38888343-38888599)
	3-173, gnl\|Hg17\|chr15 (38888376-38888539)
	3-173, gnl\|loxAfr1\|scaffold_2794 (16393-16658)
	3-173, gnl\|mm7\|chr2 (118951066-118951321)
	3-173, gnl\|Mm7\|chr2 (118951097-118951260)
	3-173, gnl\|monDom2\|scaffold_12 (1394095-1393798)
	3-173, gnl\|oryCun1\|scaffold_211631 (50556-50805)
	3-173, gnl\|panTro1\|chr16 (38801843-38802097)
	3-173, gnl\|rheMac2\|chr7 (19189588-19189844)
	3-173, gnl\|rn3\|chr3 (105620051-105620312)