Non-Coding RNA Search

rpigcb_15303.y1

Sequence:


               
               AGATATTTATATAATTAAAATTCAGTTTATTATTAAAAACTGAATTAAGATGACGGTGAA
AGAACAGCCTCAGGTATGTGACTCTGCATTTCAAAGTGGTACATTTAATGTTTATGCAAG
AGTAAGACTTTTTTAAAAAACTTTATTTTAAAAAGTGATTAGCACCTTGGCTGTACAGCT
TCTAAGTTTTTTTGTTTTTTTTTTTGTAACACTGCATAAAATTTGAAATGTTTTTTGCTT
CAAAATTTGACCTACTTTAAAAAGTTCTGATAATTCCAATGTAATATATTCCCTCAGTTT
TGTAAGCGCCTTTGGGTAATGTATTGGAGAGGCAAGTAATCTCATCAAGAAGCGTAATGG
ACCCTATCACATTTCAAGATATATTTTTTTTCCTACTACTCTGCTTCAAATTTAGTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATATTTATATAATTAAAATTCAGTTTATTATTAAAAACTGAATTAAGATGACGGTGAA
AGAACAGCCTCAGGTATGTGACTCTGCATTTCAAAGTGGTACATTTAATGTTTATGCAAG
AGTAAGACTTTTTTAAAAAACTTTATTTTAAAAAGTGATTAGCACCTTGGCTGTACAGCT
TCTAAGTTTTTTTGTTTTTTTTTTTGTAACACTGCATAAAATTTGAAATGTTTTTTGCTT
CAAAATTTGACCTACTTTAAAAAGTTCTGATAATTCCAATGTAATATATTCCCTCAGTTT
TGTAAGCGCCTTTGGGTAATGTATTGGAGAGGCAAGTAATCTCATCAAGAAGCGTAATGG
ACCCTATCACATTTCAAGATATATTTTTTTTCCTACTACTCTGCTTCAAATTTAGTTCT

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-419, gnl|bosTau2|chr4 (9387106-9386699)
               

               
               1-419, gnl|canFam2|chr14 (35548587-35549184)
               

               
               1-419, gnl|echTel1|scaffold_214902 (6657-7258)
               

               
               1-419, gnl|galGal2|chr2 (28448494-28449116)
               

               
               1-419, gnl|hg17|chr7 (18111792-18112392)
               

               
               1-419, gnl|Hg17|chr7 (18111903-18112312)
               

               
               1-419, gnl|loxAfr1|scaffold_6670 (54220-54821)
               

               
               1-419, gnl|mm7|chr12 (32556588-32555963)
               

               
               1-419, gnl|Mm7|chr12 (32556473-32556034)
               

               
               1-419, gnl|monDom2|scaffold_57 (8581718-8581090)
               

               
               1-419, gnl|oryCun1|scaffold_208686 (186962-187582)
               

               
               1-419, gnl|panTro1|chr6 (19018843-19019442)
               

               
               1-419, gnl|rheMac2|chr3 (107840386-107839786)
               

               
               1-419, gnl|rn3|chr6 (53381201-53380584)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-419, gnl|bosTau2|chr4 (9387106-9386699)
               

               
               1-419, gnl|canFam2|chr14 (35548587-35549184)
               

               
               1-419, gnl|echTel1|scaffold_214902 (6657-7258)
               

               
               1-419, gnl|galGal2|chr2 (28448494-28449116)
               

               
               1-419, gnl|hg17|chr7 (18111792-18112392)
               

               
               1-419, gnl|Hg17|chr7 (18111903-18112312)
               

               
               1-419, gnl|loxAfr1|scaffold_6670 (54220-54821)
               

               
               1-419, gnl|mm7|chr12 (32556588-32555963)
               

               
               1-419, gnl|Mm7|chr12 (32556473-32556034)
               

               
               1-419, gnl|monDom2|scaffold_57 (8581718-8581090)
               

               
               1-419, gnl|oryCun1|scaffold_208686 (186962-187582)
               

               
               1-419, gnl|panTro1|chr6 (19018843-19019442)
               

               
               1-419, gnl|rheMac2|chr3 (107840386-107839786)
               

               
               1-419, gnl|rn3|chr6 (53381201-53380584)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	1-419, gnl\|bosTau2\|chr4 (9387106-9386699)
	1-419, gnl\|canFam2\|chr14 (35548587-35549184)
	1-419, gnl\|echTel1\|scaffold_214902 (6657-7258)
	1-419, gnl\|galGal2\|chr2 (28448494-28449116)
	1-419, gnl\|hg17\|chr7 (18111792-18112392)
	1-419, gnl\|Hg17\|chr7 (18111903-18112312)
	1-419, gnl\|loxAfr1\|scaffold_6670 (54220-54821)
	1-419, gnl\|mm7\|chr12 (32556588-32555963)
	1-419, gnl\|Mm7\|chr12 (32556473-32556034)
	1-419, gnl\|monDom2\|scaffold_57 (8581718-8581090)
	1-419, gnl\|oryCun1\|scaffold_208686 (186962-187582)
	1-419, gnl\|panTro1\|chr6 (19018843-19019442)
	1-419, gnl\|rheMac2\|chr3 (107840386-107839786)
	1-419, gnl\|rn3\|chr6 (53381201-53380584)