rpigcb_15357.y1
|
CTGCAGGAATCGGCACAGGAATGTTTTTAATTCTATAAAATGTTACATATATTTATATGG
ATGTACACTCTAGTTATTTGTTTTATAATGAACCGAGAATAAAATAAGTAAAAAAAATTT
TTGTCCAAAGTTGTGCTAATGGAAACTGGCTTTTACGTCAAGCAAGAGAATTTTCTTTCC
AGTTATATAGTCTTATTCTAATCTCTTTCTGTGGGAACTAAGCCAGGATATTCTACCAGC
TTTTATTAGCTATTAGCTAAATAAACTTTTAAAATTGGTGTATAGGCTGCCTAAGGAAAT
AATAACTAAAAATCTACTAAATCTGAATTTTAAGAGATTTTTGTTATATTTATTCATATG
AATTGCTTAGATAAGTCAAAAGGTATTCATATTTTTTAAAGCAGAAAAAAAATTACTGGA
ATTTTTTAGATTCTTAAAGTAATATTCCTTTTGACCGGAATTATTCAAGTGATTATCCCT
GATATATTGGGTAAATATCCCTAATTTACAGACTCAGAATGATAGTTTCTGGATCAGAGA
ACAACTTACAGGTATTTGTTTCTGAACTTAAGTAATGACCACTTCAAATACTGCAGCTAT
TAATATGC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTGCAGGAATCGGCACAGGAATGTTTTTAATTCTATAAAATGTTACATATATTTATATGG
ATGTACACTCTAGTTATTTGTTTTATAATGAACCGAGAATAAAATAAGTAAAAAAAATTT
TTGTCCAAAGTTGTGCTAATGGAAACTGGCTTTTACGTCAAGCAAGAGAATTTTCTTTCC
AGTTATATAGTCTTATTCTAATCTCTTTCTGTGGGAACTAAGCCAGGATATTCTACCAGC
TTTTATTAGCTATTAGCTAAATAAACTTTTAAAATTGGTGTATAGGCTGCCTAAGGAAAT
AATAACTAAAAATCTACTAAATCTGAATTTTAAGAGATTTTTGTTATATTTATTCATATG
AATTGCTTAGATAAGTCAAAAGGTATTCATATTTTTTAAAGCAGAAAAAAAATTACTGGA
ATTTTTTAGATTCTTAAAGTAATATTCCTTTTGACCGGAATTATTCAAGTGATTATCCCT
GATATATTGGGTAAATATCCCTAATTTACAGACTCAGAATGATAGTTTCTGGATCAGAGA
ACAACTTACAGGTATTTGTTTCTGAACTTAAGTAATGACCACTTCAAATACTGCAGCTAT
TAATATGC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
143-261, + strand, RNAmicro p=0.947109 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
143-261, + strand, RNAmicro p=0.947109 |
|
36-606, gnl|bosTau2|chr7 (51053508-51054072) |
|
36-606, gnl|canFam2|chr3 (28763109-28762677) |
|
36-606, gnl|dasNov1|scaffold_4441 (73736-74164) |
|
36-606, gnl|galGal2|chrZ (28921220-28921716) |
|
36-606, gnl|hg17|chr5 (80774313-80774729) |
|
36-606, gnl|Hg17|chr5 (80774961-80774399) |
|
36-606, gnl|loxAfr1|scaffold_4212 (19077-18655) |
|
36-606, gnl|mm7|chr13 (88762149-88761781) |
|
36-606, gnl|monDom2|scaffold_20 (22639337-22638886) |
|
36-606, gnl|oryCun1|scaffold_197042 (55042-54656) |
|
36-606, gnl|panTro1|chr4 (34405199-34404783) |
|
36-606, gnl|rheMac2|chr6 (77626222-77626637) |
|
36-606, gnl|rn3|chr2 (21830544-21830154) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
36-606, gnl|bosTau2|chr7 (51053508-51054072) |
|
36-606, gnl|canFam2|chr3 (28763109-28762677) |
|
36-606, gnl|dasNov1|scaffold_4441 (73736-74164) |
|
36-606, gnl|galGal2|chrZ (28921220-28921716) |
|
36-606, gnl|hg17|chr5 (80774313-80774729) |
|
36-606, gnl|Hg17|chr5 (80774961-80774399) |
|
36-606, gnl|loxAfr1|scaffold_4212 (19077-18655) |
|
36-606, gnl|mm7|chr13 (88762149-88761781) |
|
36-606, gnl|monDom2|scaffold_20 (22639337-22638886) |
|
36-606, gnl|oryCun1|scaffold_197042 (55042-54656) |
|
36-606, gnl|panTro1|chr4 (34405199-34404783) |
|
36-606, gnl|rheMac2|chr6 (77626222-77626637) |
|
36-606, gnl|rn3|chr2 (21830544-21830154) |
