rpigcb_15366.y1
|
AGCCTATGGTGTGGACGGTTTAAAAACAAGATACCCCGACCTGCTGCCCTTCCCCCAGAT
CCCAAACGACAGGTTCACTTCCGAGGTTGCCATGAGGGTGATGGAGTGCACGGCCTGTAT
CATCATCAAGCTCGAAAACTTTATACAGCAGAAGTTGTGAAAGTATTTAAAGAAAAAGCA
GAGCCAGATCTTGAATGTGTTGTAGCACAAATAGGAATTGCTATGCCTCCTTGAGCTTCC
CCGTCCGCTGTTTTGGAATTGCAAAGCACACTCCGACTGCTTGGGAAGGAGTTGGGAGCT
GTGAGCCTGCCCATCGACAGAGCAACTTGCCTGACCGCCAGTGTACCTGGCCGGCCGGGC
CGGGCCTCGTTCACCCGCTCTGTGTACAACCAAAGCTTAGCGGTCTGTCAGCTAAGAGGC
CAGCGTCTCTGCTTCGGATGAAGTTAGTTTTCTGTTTCTAACATGGTCCATTTGAAGAGC
TCATGAAACACTGGACATGTCACTGGTTTCAACAACTAAGGGGAATTACGTCTCTGGAAT
TCATGATTTCTTTAAGTGGATCCTCTTTGGATGTGTTATTTTCTTATCAGCTGGATCTGA
T
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGCCTATGGTGTGGACGGTTTAAAAACAAGATACCCCGACCTGCTGCCCTTCCCCCAGAT
CCCAAACGACAGGTTCACTTCCGAGGTTGCCATGAGGGTGATGGAGTGCACGGCCTGTAT
CATCATCAAGCTCGAAAACTTTATACAGCAGAAGTTGTGAAAGTATTTAAAGAAAAAGCA
GAGCCAGATCTTGAATGTGTTGTAGCACAAATAGGAATTGCTATGCCTCCTTGAGCTTCC
CCGTCCGCTGTTTTGGAATTGCAAAGCACACTCCGACTGCTTGGGAAGGAGTTGGGAGCT
GTGAGCCTGCCCATCGACAGAGCAACTTGCCTGACCGCCAGTGTACCTGGCCGGCCGGGC
CGGGCCTCGTTCACCCGCTCTGTGTACAACCAAAGCTTAGCGGTCTGTCAGCTAAGAGGC
CAGCGTCTCTGCTTCGGATGAAGTTAGTTTTCTGTTTCTAACATGGTCCATTTGAAGAGC
TCATGAAACACTGGACATGTCACTGGTTTCAACAACTAAGGGGAATTACGTCTCTGGAAT
TCATGATTTCTTTAAGTGGATCCTCTTTGGATGTGTTATTTTCTTATCAGCTGGATCTGA
T
|
|
2-270, gnl|bosTau2|chr12 (19491518-19491788) |
|
2-270, gnl|Hg17|chr13 (22802433-22802169) |
|
2-270, gnl|Mm7|chr14 (56081770-56082034) |
| |
|
347-579, gnl|bosTau2|chr12 (19491907-19492152) |
|
347-579, gnl|canFam2|chr25 (18282809-18282490) |
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347-579, gnl|dasNov1|scaffold_6336 (32074-32407) |
|
347-579, gnl|galGal2|chr1 (169642680-169642298) |
|
347-579, gnl|hg17|chr13 (22801724-22802046) |
|
347-579, gnl|Hg17|chr13 (22802044-22801802) |
|
347-579, gnl|loxAfr1|scaffold_53762 (15806-15498) |
|
347-579, gnl|mm7|chr14 (56082442-56082147) |
|
347-579, gnl|Mm7|chr14 (56082147-56082366) |
|
347-579, gnl|monDom2|scaffold_15 (32187908-32188246) |
|
347-579, gnl|oryCun1|scaffold_209438 (38801-39116) |
|
347-579, gnl|panTro1|chr14 (21988177-21988499) |
|
347-579, gnl|rheMac2|chr17 (3727541-3727863) |
|
347-579, gnl|rn3|chr15 (40359582-40359280) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
2-270, gnl|bosTau2|chr12 (19491518-19491788) |
|
2-270, gnl|Hg17|chr13 (22802433-22802169) |
|
2-270, gnl|Mm7|chr14 (56081770-56082034) |
| |
|
347-579, gnl|bosTau2|chr12 (19491907-19492152) |
|
347-579, gnl|canFam2|chr25 (18282809-18282490) |
|
347-579, gnl|dasNov1|scaffold_6336 (32074-32407) |
|
347-579, gnl|galGal2|chr1 (169642680-169642298) |
|
347-579, gnl|hg17|chr13 (22801724-22802046) |
|
347-579, gnl|Hg17|chr13 (22802044-22801802) |
|
347-579, gnl|loxAfr1|scaffold_53762 (15806-15498) |
|
347-579, gnl|mm7|chr14 (56082442-56082147) |
|
347-579, gnl|Mm7|chr14 (56082147-56082366) |
|
347-579, gnl|monDom2|scaffold_15 (32187908-32188246) |
|
347-579, gnl|oryCun1|scaffold_209438 (38801-39116) |
|
347-579, gnl|panTro1|chr14 (21988177-21988499) |
|
347-579, gnl|rheMac2|chr17 (3727541-3727863) |
|
347-579, gnl|rn3|chr15 (40359582-40359280) |
