Non-Coding RNA Search

rpigcb_15584.y1

Sequence:


               
               ACAGCAGGACAGAAGTCAGAGCCAGTGCAATACACACACTGGAATGCACGTCAGCCCCGC
TACAGTGGTGGCTGTGTTGTCATGAGAGGAAGGAGTCCCCCTGGTCGCTGGGAAGTGAAG
GACTGTAGATACTTCAAGGCAATGTCCCTGTGCAAGCAGCCAGTGGAAAATGGGGAGAAA
ACTGAGCAAGAAGAGAGATGGCCCTTTCACCCCTGCTATTTGGACTGGGAGTCAGAGCCT
GGCCTGGCCAGTTGCTTCAAGGTATTTCATAGTGAAAAAGTCCTGATGAAAAGAACATGG
AGAGAAGCCGAAGCATTCTGTGAAGAATTTGGAGCTCATCTTGCAAGCTTTGCCCATATT
GAGGAAGAGAATTTTGTGAATGAGCTTTTATATTCAAAATTTAATCGGACAGAAGAAAGG
CAGTTCTGGATTGGATTTAATAAAAGAAACCCACTCAATGCTGGCTCTTGGGAGTGGTCT
GATGGAACTCCTGTTGTCTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGCAGGACAGAAGTCAGAGCCAGTGCAATACACACACTGGAATGCACGTCAGCCCCGC
TACAGTGGTGGCTGTGTTGTCATGAGAGGAAGGAGTCCCCCTGGTCGCTGGGAAGTGAAG
GACTGTAGATACTTCAAGGCAATGTCCCTGTGCAAGCAGCCAGTGGAAAATGGGGAGAAA
ACTGAGCAAGAAGAGAGATGGCCCTTTCACCCCTGCTATTTGGACTGGGAGTCAGAGCCT
GGCCTGGCCAGTTGCTTCAAGGTATTTCATAGTGAAAAAGTCCTGATGAAAAGAACATGG
AGAGAAGCCGAAGCATTCTGTGAAGAATTTGGAGCTCATCTTGCAAGCTTTGCCCATATT
GAGGAAGAGAATTTTGTGAATGAGCTTTTATATTCAAAATTTAATCGGACAGAAGAAAGG
CAGTTCTGGATTGGATTTAATAAAAGAAACCCACTCAATGCTGGCTCTTGGGAGTGGTCT
GATGGAACTCCTGTTGTCTCTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               146-264, - strand, RNAz p=0.667477

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               146-264, - strand, RNAz p=0.667477

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               59-264, gnl|bosTau2|chr2 (26059444-26059239)
               

               
               59-264, gnl|Hg17|chr2 (160669376-160669171)
               

               
               59-264, gnl|Mm7|chr2 (60389001-60388796)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               59-264, gnl|bosTau2|chr2 (26059444-26059239)
               

               
               59-264, gnl|Hg17|chr2 (160669376-160669171)
               

               
               59-264, gnl|Mm7|chr2 (60389001-60388796)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	59-264, gnl\|bosTau2\|chr2 (26059444-26059239)
	59-264, gnl\|Hg17\|chr2 (160669376-160669171)
	59-264, gnl\|Mm7\|chr2 (60389001-60388796)