Non-Coding RNA Search

rpigcb_15703.y1

Sequence:


               
               GGCGAGGAAGGAAATAGGGCGCGGGGCGCCGCCGTGGAAGAACTCCATTCAGAGGCAGTC
GTGATAAACCAGAGCATCAGCCCTTTCCGCTGGGATACCAATAAGTCTTGAACTTCAAAA
CTGCTGACCTAAAAGGATACTTGAGAAGGAGCAAGTCTTTCCTTTTTTCTTTTAAAGAAA
GCAACACCAGAAGCAGTCGAACTTCCTTGTTCACTTAGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGAGGAAGGAAATAGGGCGCGGGGCGCCGCCGTGGAAGAACTCCATTCAGAGGCAGTC
GTGATAAACCAGAGCATCAGCCCTTTCCGCTGGGATACCAATAAGTCTTGAACTTCAAAA
CTGCTGACCTAAAAGGATACTTGAGAAGGAGCAAGTCTTTCCTTTTTTCTTTTAAAGAAA
GCAACACCAGAAGCAGTCGAACTTCCTTGTTCACTTAGGT

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               31-218, gnl|bosTau2|chr12 (15266108-15265922)
               

               
               31-218, gnl|canFam2|chr25 (14087346-14086786)
               

               
               31-218, gnl|hg17|chr13 (28112951-28113505)
               

               
               31-218, gnl|Hg17|chr13 (28113330-28113143)
               

               
               31-218, gnl|mm7|chr5 (146744782-146745290)
               

               
               31-218, gnl|Mm7|chr5 (146745160-146744988)
               

               
               31-218, gnl|monDom2|scaffold_15 (37981839-37982372)
               

               
               31-218, gnl|panTro1|chr14 (27297446-27297999)
               

               
               31-218, gnl|rheMac2|chr17 (8281078-8281630)
               

               
               31-218, gnl|rn3|chr12 (7775136-7774629)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               31-218, gnl|bosTau2|chr12 (15266108-15265922)
               

               
               31-218, gnl|canFam2|chr25 (14087346-14086786)
               

               
               31-218, gnl|hg17|chr13 (28112951-28113505)
               

               
               31-218, gnl|Hg17|chr13 (28113330-28113143)
               

               
               31-218, gnl|mm7|chr5 (146744782-146745290)
               

               
               31-218, gnl|Mm7|chr5 (146745160-146744988)
               

               
               31-218, gnl|monDom2|scaffold_15 (37981839-37982372)
               

               
               31-218, gnl|panTro1|chr14 (27297446-27297999)
               

               
               31-218, gnl|rheMac2|chr17 (8281078-8281630)
               

               
               31-218, gnl|rn3|chr12 (7775136-7774629)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	31-218, gnl\|bosTau2\|chr12 (15266108-15265922)
	31-218, gnl\|canFam2\|chr25 (14087346-14086786)
	31-218, gnl\|hg17\|chr13 (28112951-28113505)
	31-218, gnl\|Hg17\|chr13 (28113330-28113143)
	31-218, gnl\|mm7\|chr5 (146744782-146745290)
	31-218, gnl\|Mm7\|chr5 (146745160-146744988)
	31-218, gnl\|monDom2\|scaffold_15 (37981839-37982372)
	31-218, gnl\|panTro1\|chr14 (27297446-27297999)
	31-218, gnl\|rheMac2\|chr17 (8281078-8281630)
	31-218, gnl\|rn3\|chr12 (7775136-7774629)