Non-Coding RNA Search

rpigcb_15940.y1

Sequence:


               
               GCACTGGCCTCCCTGGGGGTGCATGGGTCACTAGGAGCTCCCCGTGCAGGATCGATTTGC
ACGTGTCGTGGGAGGCGGGAACATGAGCAGGGAAATGAATGAGTCAGTCAGGAGCACAGC
CTGCTTGTGTGACCTGTGCACTGGAAGGCGGCTTGGAGGCTGCTCACCTTTCTTGGTCTC
GCTCTCTCTGATCATGAAGGAGCCGACCTTCGTGTCTGGTAGCTGGAGCAGCTCCTCTGC
CTTGTCTCTGCCCAGCCCTTCAAACAGCCAGCTGCGGAGGGGAAGACAGCCATGAGTACC
GTGTGCACGCCCGCCCCCTAAAGACGCAGAGATGCAGGGATGACGCTCGGGCTTAGCTAC
AGAAAACTGTTGGGATTAAAAAGAGCAAGGCAgagttcccgtcatggcgcagtggaaaca
aatccaactgggaaccatgaggctgcgggtgcaatccctggccttgttcagtgggttgag
gatctggtgtt

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACTGGCCTCCCTGGGGGTGCATGGGTCACTAGGAGCTCCCCGTGCAGGATCGATTTGC
ACGTGTCGTGGGAGGCGGGAACATGAGCAGGGAAATGAATGAGTCAGTCAGGAGCACAGC
CTGCTTGTGTGACCTGTGCACTGGAAGGCGGCTTGGAGGCTGCTCACCTTTCTTGGTCTC
GCTCTCTCTGATCATGAAGGAGCCGACCTTCGTGTCTGGTAGCTGGAGCAGCTCCTCTGC
CTTGTCTCTGCCCAGCCCTTCAAACAGCCAGCTGCGGAGGGGAAGACAGCCATGAGTACC
GTGTGCACGCCCGCCCCCTAAAGACGCAGAGATGCAGGGATGACGCTCGGGCTTAGCTAC
AGAAAACTGTTGGGATTAAAAAGAGCAAGGCAgagttcccgtcatggcgcagtggaaaca
aatccaactgggaaccatgaggctgcgggtgcaatccctggccttgttcagtgggttgag
gatctggtgtt

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               156-273, - strand, RNAz p=0.507436

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               156-273, - strand, RNAz p=0.507436

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-382, gnl|bosTau2|chr14 (4613220-4613604)
               

               
               4-382, gnl|Hg17|chr8 (134129096-134129421)
               

               
               4-382, gnl|Mm7|chr15 (66873207-66873566)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-382, gnl|bosTau2|chr14 (4613220-4613604)
               

               
               4-382, gnl|Hg17|chr8 (134129096-134129421)
               

               
               4-382, gnl|Mm7|chr15 (66873207-66873566)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	4-382, gnl\|bosTau2\|chr14 (4613220-4613604)
	4-382, gnl\|Hg17\|chr8 (134129096-134129421)
	4-382, gnl\|Mm7\|chr15 (66873207-66873566)