Non-Coding RNA Search

rpigcb_15987.y1

Sequence:


               
               AGCAACAACAACAACAACAACAAAAGACAAAAGACAAAAAAAAAAAAAAGAAAGAAGCTT
CCAGATCACTCTAGTCTAGGCTCTTCATTTTATGCGGAAGAAATAAATGGAGAAAACTTA
TGCTGACTTTTTCTCTGTGGCTTCAGATCACTCAGGACAAGGGAACCAAATTGGGATTTA
GCAAAAGATAGAGTGTTTCCTGCAAGTTGGACCAGGAATCCCTCAGGCTTTGAGAAAACT
GATAGAGAAGTGAAAAAGATTTCTAACCAATCCAGTTCATTATCAAGAAGAGTTAACTAg
gaattcccatcgtggctcactggaaacaaatctgactagtatccatgaggactcaggttc
gatccctggccttgatcagtgggttaaggatccagcattgctgtgagctgtggtgtaggt
tgcaaatacggctaggatcctttgttgctgtggctgtggcgtaggccagcggctacagct
tggattcaatacctagcctgggaaactccatatgccatgggtgcagcctgaaaaagacaG
AAAAAAAAAAAGAAGAGTAAACCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCAACAACAACAACAACAACAAAAGACAAAAGACAAAAAAAAAAAAAAGAAAGAAGCTT
CCAGATCACTCTAGTCTAGGCTCTTCATTTTATGCGGAAGAAATAAATGGAGAAAACTTA
TGCTGACTTTTTCTCTGTGGCTTCAGATCACTCAGGACAAGGGAACCAAATTGGGATTTA
GCAAAAGATAGAGTGTTTCCTGCAAGTTGGACCAGGAATCCCTCAGGCTTTGAGAAAACT
GATAGAGAAGTGAAAAAGATTTCTAACCAATCCAGTTCATTATCAAGAAGAGTTAACTAg
gaattcccatcgtggctcactggaaacaaatctgactagtatccatgaggactcaggttc
gatccctggccttgatcagtgggttaaggatccagcattgctgtgagctgtggtgtaggt
tgcaaatacggctaggatcctttgttgctgtggctgtggcgtaggccagcggctacagct
tggattcaatacctagcctgggaaactccatatgccatgggtgcagcctgaaaaagacaG
AAAAAAAAAAAGAAGAGTAAACCAA

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               49-292, gnl|bosTau2|chr19 (13949309-13949078)
               

               
               49-292, gnl|echTel1|scaffold_311073 (102761-102455)
               

               
               49-292, gnl|hg17|chr17 (24395083-24395386)
               

               
               49-292, gnl|Hg17|chr17 (24395427-24395198)
               

               
               49-292, gnl|loxAfr1|scaffold_31136 (30673-30331)
               

               
               49-292, gnl|mm7|chr11 (77974683-77974384)
               

               
               49-292, gnl|Mm7|chr11 (77974342-77974559)
               

               
               49-292, gnl|oryCun1|scaffold_206953 (69470-69747)
               

               
               49-292, gnl|panTro1|chr19 (27740406-27740709)
               

               
               49-292, gnl|rheMac2|chr16 (24262927-24263242)
               

               
               49-292, gnl|rn3|chr10 (63946332-63946035)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               49-292, gnl|bosTau2|chr19 (13949309-13949078)
               

               
               49-292, gnl|echTel1|scaffold_311073 (102761-102455)
               

               
               49-292, gnl|hg17|chr17 (24395083-24395386)
               

               
               49-292, gnl|Hg17|chr17 (24395427-24395198)
               

               
               49-292, gnl|loxAfr1|scaffold_31136 (30673-30331)
               

               
               49-292, gnl|mm7|chr11 (77974683-77974384)
               

               
               49-292, gnl|Mm7|chr11 (77974342-77974559)
               

               
               49-292, gnl|oryCun1|scaffold_206953 (69470-69747)
               

               
               49-292, gnl|panTro1|chr19 (27740406-27740709)
               

               
               49-292, gnl|rheMac2|chr16 (24262927-24263242)
               

               
               49-292, gnl|rn3|chr10 (63946332-63946035)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	49-292, gnl\|bosTau2\|chr19 (13949309-13949078)
	49-292, gnl\|echTel1\|scaffold_311073 (102761-102455)
	49-292, gnl\|hg17\|chr17 (24395083-24395386)
	49-292, gnl\|Hg17\|chr17 (24395427-24395198)
	49-292, gnl\|loxAfr1\|scaffold_31136 (30673-30331)
	49-292, gnl\|mm7\|chr11 (77974683-77974384)
	49-292, gnl\|Mm7\|chr11 (77974342-77974559)
	49-292, gnl\|oryCun1\|scaffold_206953 (69470-69747)
	49-292, gnl\|panTro1\|chr19 (27740406-27740709)
	49-292, gnl\|rheMac2\|chr16 (24262927-24263242)
	49-292, gnl\|rn3\|chr10 (63946332-63946035)