Non-Coding RNA Search

rpigcb_16141.y1

Sequence:


               
               CCTCGACACACACTATAACACTGAGAACGACGTGGAGATCATCCGGGCCAGCGTCTGTGT
TATAGTGTGTGTCGAGGACTTGGGGAGCGAAGCCGGGAGGGCAGTGCTGGACACAGGTCT
TCTGGTGCAGGGAGAAGCCCTCCTCGCACACACTATAACACTGAGAACGACGTGGAGATC
ATCCGGGCCAGCGTCTGTGTCCCCTGCCATGCCTCGTGTGCCACGTGCCAGGGGCCAGCC
CCCACGGACTGCCTCACCTGCCCCAGCCACGCATCCCTGGACCCCGTGGAGCAGACGTGC
TCCCGGCAAAGCCAGAGCAGCTGCCCTCACACCTGCCCGAGGTGGTGGCCGGCCTCATCT
GCGCCCTCATCGTGCTGGTCTTCGTCACTGTCTTCCTGGTCCTGCAGCTGCGCTCGGGCT
TCAGCTTCCGGGGGGTGAAGGTGTACACCATGGACCGTGGCCTCATCTCCTACAAGGGGC
TGCCCCCTGAAGCCTGGCAGGAGGAGTGTCCATCCGACTCCGAAGAGGACGAGGGCCGGG
GCGAGAGGACCGCCTTTATCAAAGACCAGAGCGCCCTTTGACAGCGCCTGCCGCTCCCCG
AGCCCGCCCCTCCTCGGGCACTTGTTACTTCACCAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCGACACACACTATAACACTGAGAACGACGTGGAGATCATCCGGGCCAGCGTCTGTGT
TATAGTGTGTGTCGAGGACTTGGGGAGCGAAGCCGGGAGGGCAGTGCTGGACACAGGTCT
TCTGGTGCAGGGAGAAGCCCTCCTCGCACACACTATAACACTGAGAACGACGTGGAGATC
ATCCGGGCCAGCGTCTGTGTCCCCTGCCATGCCTCGTGTGCCACGTGCCAGGGGCCAGCC
CCCACGGACTGCCTCACCTGCCCCAGCCACGCATCCCTGGACCCCGTGGAGCAGACGTGC
TCCCGGCAAAGCCAGAGCAGCTGCCCTCACACCTGCCCGAGGTGGTGGCCGGCCTCATCT
GCGCCCTCATCGTGCTGGTCTTCGTCACTGTCTTCCTGGTCCTGCAGCTGCGCTCGGGCT
TCAGCTTCCGGGGGGTGAAGGTGTACACCATGGACCGTGGCCTCATCTCCTACAAGGGGC
TGCCCCCTGAAGCCTGGCAGGAGGAGTGTCCATCCGACTCCGAAGAGGACGAGGGCCGGG
GCGAGAGGACCGCCTTTATCAAAGACCAGAGCGCCCTTTGACAGCGCCTGCCGCTCCCCG
AGCCCGCCCCTCCTCGGGCACTTGTTACTTCACCAAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               219-336, - strand, RNAz p=0.938046

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               219-336, - strand, RNAz p=0.938046

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               141-336, gnl|bosTau2|chr21 (12179126-12178929)
               

               
               141-336, gnl|Hg17|chr15 (89225592-89225789)
               

               
               141-336, gnl|Mm7|chr7 (76262666-76262469)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               141-336, gnl|bosTau2|chr21 (12179126-12178929)
               

               
               141-336, gnl|Hg17|chr15 (89225592-89225789)
               

               
               141-336, gnl|Mm7|chr7 (76262666-76262469)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	141-336, gnl\|bosTau2\|chr21 (12179126-12178929)
	141-336, gnl\|Hg17\|chr15 (89225592-89225789)
	141-336, gnl\|Mm7\|chr7 (76262666-76262469)