Non-Coding RNA Search

rpigcb_16476.y1

Sequence:


               
               TCCTCAAGGTCACAAAGTTGACAAGGCAACGCCAGACTGCCAGCTCAGGGCCTTCCATCT
GCAATCCTCAGCCGCAGAACCCAAACTAGATGAGCAGGTCAGTGGCGTGAACTGGACCGG
CTCCCAAGGCCCAGAAGAAAGGAGTGAGTACCTGAAGAAAGTGAAAAGCATTCTGAACAT
CGTTAAAGAAGGGCAGATATCTCTGCTGCCGCACCTGGCTGCTGACAATCTAGACAAAAT
CCATGACGAAAACGGAAACAATCTCTTACACGTTGCCGCGTCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCTCAAGGTCACAAAGTTGACAAGGCAACGCCAGACTGCCAGCTCAGGGCCTTCCATCT
GCAATCCTCAGCCGCAGAACCCAAACTAGATGAGCAGGTCAGTGGCGTGAACTGGACCGG
CTCCCAAGGCCCAGAAGAAAGGAGTGAGTACCTGAAGAAAGTGAAAAGCATTCTGAACAT
CGTTAAAGAAGGGCAGATATCTCTGCTGCCGCACCTGGCTGCTGACAATCTAGACAAAAT
CCATGACGAAAACGGAAACAATCTCTTACACGTTGCCGCGTCAC

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

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               1-208, gnl|bosTau2|chr25 (17124813-17125023)
               

               
               1-208, gnl|canFam2|chr11 (15341071-15341384)
               

               
               1-208, gnl|dasNov1|scaffold_265 (170327-170640)
               

               
               1-208, gnl|echTel1|scaffold_323427 (44924-44611)
               

               
               1-208, gnl|galGal2|chrUn (1143479-1143789)
               

               
               1-208, gnl|hg17|chr5 (121786945-121787258)
               

               
               1-208, gnl|Hg17|chr5 (121787126-121787333)
               

               
               1-208, gnl|loxAfr1|scaffold_3953 (13821-14134)
               

               
               1-208, gnl|mm7|chr18 (53249788-53250101)
               

               
               1-208, gnl|Mm7|chr18 (53249969-53250176)
               

               
               1-208, gnl|monDom2|scaffold_55 (4077246-4076933)
               

               
               1-208, gnl|oryCun1|scaffold_171211 (3956-3643)
               

               
               1-208, gnl|panTro1|chr4 (128046400-128046712)
               

               
               1-208, gnl|rheMac2|chr6 (118842455-118842768)
               

               
               1-208, gnl|rn3|chr18 (48260018-48260331)
               

               
               1-208, gnl|xenTro1|scaffold_2 (4776429-4776136)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-208, gnl|bosTau2|chr25 (17124813-17125023)
               

               
               1-208, gnl|canFam2|chr11 (15341071-15341384)
               

               
               1-208, gnl|dasNov1|scaffold_265 (170327-170640)
               

               
               1-208, gnl|echTel1|scaffold_323427 (44924-44611)
               

               
               1-208, gnl|galGal2|chrUn (1143479-1143789)
               

               
               1-208, gnl|hg17|chr5 (121786945-121787258)
               

               
               1-208, gnl|Hg17|chr5 (121787126-121787333)
               

               
               1-208, gnl|loxAfr1|scaffold_3953 (13821-14134)
               

               
               1-208, gnl|mm7|chr18 (53249788-53250101)
               

               
               1-208, gnl|Mm7|chr18 (53249969-53250176)
               

               
               1-208, gnl|monDom2|scaffold_55 (4077246-4076933)
               

               
               1-208, gnl|oryCun1|scaffold_171211 (3956-3643)
               

               
               1-208, gnl|panTro1|chr4 (128046400-128046712)
               

               
               1-208, gnl|rheMac2|chr6 (118842455-118842768)
               

               
               1-208, gnl|rn3|chr18 (48260018-48260331)
               

               
               1-208, gnl|xenTro1|scaffold_2 (4776429-4776136)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cty (0.10408)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	1-208, gnl\|bosTau2\|chr25 (17124813-17125023)
	1-208, gnl\|canFam2\|chr11 (15341071-15341384)
	1-208, gnl\|dasNov1\|scaffold_265 (170327-170640)
	1-208, gnl\|echTel1\|scaffold_323427 (44924-44611)
	1-208, gnl\|galGal2\|chrUn (1143479-1143789)
	1-208, gnl\|hg17\|chr5 (121786945-121787258)
	1-208, gnl\|Hg17\|chr5 (121787126-121787333)
	1-208, gnl\|loxAfr1\|scaffold_3953 (13821-14134)
	1-208, gnl\|mm7\|chr18 (53249788-53250101)
	1-208, gnl\|Mm7\|chr18 (53249969-53250176)
	1-208, gnl\|monDom2\|scaffold_55 (4077246-4076933)
	1-208, gnl\|oryCun1\|scaffold_171211 (3956-3643)
	1-208, gnl\|panTro1\|chr4 (128046400-128046712)
	1-208, gnl\|rheMac2\|chr6 (118842455-118842768)
	1-208, gnl\|rn3\|chr18 (48260018-48260331)
	1-208, gnl\|xenTro1\|scaffold_2 (4776429-4776136)